CX296301

Overview
NameCX296301
Unique NameCX296301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.844e-17
Identity = 49/117 (41.88%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG-------KCDSNAAVARECDSSAEAGACETKRK----RDCESEEEERKAKVVKT 500
            HYRGVRRRPWGK+AAEIRDP + G RVWLGT++T            +++RGSKA LNFP   G       +  +    + E  SS+E  + + +RK       E+ E E K+ V++T
Sbjct:  104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEKSEAVEVESKSNVLQT 220          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.851e-17
Identity = 47/120 (39.17%), Postives = 68/120 (56.67%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG-----------KCDSNAAVARECDSSAEAGACETKRK----RDCESEEEERKAKVVK 497
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT+++            F++RG+KA+LNFP   G           K   + + +    S++E+G+ + +RK    +  E E E R   V+K
Sbjct:  106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASESGSPKRRRKGVAAKQAELEVESRGPNVMK 225          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPAS 545
            YRGVR+RPWGK+AAEIRD TR+G+RVWLGTFDT            F L+GS A+LNFP +  + +S   +     +  E+     KRK    +    +K    K+ S+ T+   P + +S
Sbjct:   82 YRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVE-ESLRKMENVNLNDGESPVIALKRKHSMRNRPRGKK----KSSSSSTLTSSPSSSSS 196          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.081e-16
Identity = 43/92 (46.74%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVAR----ECDSSAEAGACETKR 446
            HYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T            F++RGS+A+LNFPL     + +    +       SS E GA + +R
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRR 238          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVK 497
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T            +++RGSKA+LNFP   G  +           S E  +       +  S +  RKA   K
Sbjct:   98 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSSISSALENGSPKRRRKAVAAK 202          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG 371
            HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T            +++RGSKA+LNFP   G
Sbjct:  102 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.149e-16
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 365
            YRGVRRRPWGKYAAEIRD  R G RVWLGTF+T            F++RG+KA+LNFP E
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSE 118          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.561e-15
Identity = 44/89 (49.44%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDS-NAAVARECDSSAEAGACETKRK 449
            YRGVRRRPWGKYAAEIRD  + G RVWLGTFDT            + +RG  AILNFP E       +++ A    SSA A A  + R+
Sbjct:   15 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSSRQ 103          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.038e-15
Identity = 40/79 (50.63%), Postives = 48/79 (60.76%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAE 422
            YRGVRRRPWGKYAAEIRD  + G RVWLGTFDT            + +RG  AILNFP E      +++ A    SS++
Sbjct:   20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHEYNMGTGSSSTAANSSSSSQ 98          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.746e-15
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 365
            YRGVRRRPWGK+AAEIRD TR G+RVWLGTF++            F +RGS AILNF  E
Sbjct:   82 YRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
The following BLAST results are available for this feature:
BLAST of CX296301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
ERF1_TOBAC2.844e-1741.88Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF1_SOLLC4.851e-1739.17Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF94_ARATH1.081e-1640.00Ethylene-responsive transcription factor ERF094 OS... [more]
EF100_ARATH1.081e-1646.74Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF2_TOBAC3.145e-1640.95Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY7.006e-1657.14Ethylene-responsive transcription factor 2 OS=Nico... [more]
PTI5_SOLLC9.149e-1663.33Pathogenesis-related genes transcriptional activat... [more]
ERF96_ARATH1.561e-1549.44Ethylene-responsive transcription factor ERF096 OS... [more]
ERF97_ARATH2.038e-1550.63Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF92_ARATH7.746e-1561.67Ethylene-responsive transcription factor 1B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05138E10SK FerrChloL1 Citrus clementina cDNA clone C05138E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296301 ID=CX296301; Name=CX296301; organism=Citrus clementina; type=EST; length=628bp
ACGAGGCCTCTTGCCGAATTCGGCACGAGGCGGAATTCGAACCCAAGCCT
AAAATATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAA
AATCTCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAA
GCAAGGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGA
CGGAGGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAG
AGGCGTACGTGTCTGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTA
GGGCGTACGACCGTGCCGCTTTCCAGCTGCGCGGCTCGAAAGCGATCCTC
AACTTTCCTCTTGAAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAG
AGAGTGTGACTCGAGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGA
GGGACTGTGAAAGCGAAGAAGAGGAGAGAAAAGCCAAGGTGGTGAAAACG
GAGTCTGCGGATACAGTTAATGAATTTCCTTTGACGCCGGCGAGTTGCGC
GGCGTTTTGGGACTTGCATTTGGACTGGGACTGTGGTGTGAAAGGGATAT
TCAACGCCCCTCTACTGTCGCCGTTATC
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