CX296301

Overview
NameCX296301
Unique NameCX296301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:354..981. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 35/62 (56.45%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEA 368
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T             + +GSKA LNFP  A
Sbjct:   91 HYRGVRQRPWGKWAAEIRDP-QKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERA 151          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T             + +GSKA LNFP
Sbjct:   89 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 35/59 (59.32%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            +YRGVR+RPWGK+AAEIRDP  +  RVWLGTFDT            F+ RG KA LNFP
Sbjct:   69 NYRGVRQRPWGKWAAEIRDP-NKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 36/61 (59.02%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGS-KAILNFPLE 365
            YRGVR+RPWGK+AAEIRD TR GVRVWLGTF T             ++RG+ KA  NF LE
Sbjct:  110 YRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T             + +G+KA LNFP
Sbjct:   38 HYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.598e-12
Identity = 35/58 (60.34%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            YRGVR+RPWGK+AAEIRDP  R  RVWLGTFDT             + RG+KA LNFP
Sbjct:   77 YRGVRQRPWGKWAAEIRDP-HRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAG 371
            YRGVR+RPWGK+AAEIRDP  +  RVWLGTF+T             + RGSKA LNFP   G
Sbjct:   61 YRGVRQRPWGKWAAEIRDP-HKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAG 428
            +RGVR+RPWG++AAEIRDPT RG RVWLGT+DT             +L+G  A+ NFP+      +      E +S A+ G
Sbjct:   98 FRGVRQRPWGRWAAEIRDPT-RGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGG 177          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.699e-12
Identity = 34/59 (57.63%), Postives = 39/59 (66.10%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT             + RG KA  NFP
Sbjct:   26 HYRGVRKRPWGRYAAEIRDPGKKS-RVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 34/59 (57.63%), Postives = 40/59 (67.80%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPL 362
            YRGVRRRPWG+YAAEIRDP ++  RVWLG+F+T             + RGSKA  NFPL
Sbjct:   53 YRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
The following BLAST results are available for this feature:
BLAST of CX296301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
EF115_ARATH1.615e-1256.45Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH1.615e-1257.63Ethylene-responsive transcription factor ERF114 OS... [more]
EF112_ARATH1.615e-1259.32Ethylene-responsive transcription factor ERF112 OS... [more]
ERF91_ARATH3.598e-1259.02Ethylene-responsive transcription factor ERF091 OS... [more]
EF113_ARATH3.598e-1255.93Ethylene-responsive transcription factor ERF113 OS... [more]
EF110_ARATH3.598e-1260.34Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH4.699e-1256.45Ethylene-responsive transcription factor RAP2-6 OS... [more]
PTI6_SOLLC4.699e-1244.44Pathogenesis-related genes transcriptional activat... [more]
ERF4_TOBAC4.699e-1257.63Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF77_ARATH6.137e-1257.63Ethylene-responsive transcription factor 10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05138E10SK FerrChloL1 Citrus clementina cDNA clone C05138E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296301 ID=CX296301; Name=CX296301; organism=Citrus clementina; type=EST; length=628bp
ACGAGGCCTCTTGCCGAATTCGGCACGAGGCGGAATTCGAACCCAAGCCT
AAAATATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAA
AATCTCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAA
GCAAGGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGA
CGGAGGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAG
AGGCGTACGTGTCTGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTA
GGGCGTACGACCGTGCCGCTTTCCAGCTGCGCGGCTCGAAAGCGATCCTC
AACTTTCCTCTTGAAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAG
AGAGTGTGACTCGAGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGA
GGGACTGTGAAAGCGAAGAAGAGGAGAGAAAAGCCAAGGTGGTGAAAACG
GAGTCTGCGGATACAGTTAATGAATTTCCTTTGACGCCGGCGAGTTGCGC
GGCGTTTTGGGACTTGCATTTGGACTGGGACTGTGGTGTGAAAGGGATAT
TCAACGCCCCTCTACTGTCGCCGTTATC
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