CX296301

Overview
NameCX296301
Unique NameCX296301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.137e-12
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEE 473
            YRGVR+RPWGK+AAEIRDP +R  RVWLGTF+T               RG +A LNFP        ++ VA + D  A+A A  +    D    E+
Sbjct:  136 YRGVRQRPWGKFAAEIRDP-KRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAAD-DIGAKASASASVSATDSVEAEQ 229          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 365
            YRG+R+RPWGK+AAEIRDP R+G R WLGTFDT             ++RG+KA +NFP E
Sbjct:  128 YRGIRQRPWGKWAAEIRDP-RKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 35/59 (59.32%), Postives = 39/59 (66.10%), Query Frame = 3
Query:  183 HYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT              LRG KA  NFP
Sbjct:   11 HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.047e-11
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT             + RG+KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKKS-RVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNF---PLEAGKCDSNAAVARECDSSAE 422
            +RG+R+RPWGK+AAEIRDP R+GVRVWLGTF++             ++RG KA +NF   P  A K  + +  A+   SS E
Sbjct:  120 FRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVE 200          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.367e-11
Identity = 45/120 (37.50%), Postives = 57/120 (47.50%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPAS 545
            YRGVR+RPWGK+AAEIRDP  +  RVWLGTFD              + RG+KA LNFP        N  + R   + A+    +T  +R  +S             S  T    P+ PAS
Sbjct:  185 YRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP-------ENVKLVRPASTEAQP-VHQTAAQRPTQSR-----------NSGSTTTLLPIRPAS 284          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.978e-11
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFP 359
            YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT               RG+KA  NFP
Sbjct:   25 YRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.195e-11
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLE 365
            YRGVR+RPWG++AAEIRDP ++  RVWLGTFD+              LRG KA  NFP++
Sbjct:   27 YRGVRKRPWGRFAAEIRDPLKKS-RVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPID 85          
BLAST of CX296301 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.785e-11
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 3
Query:  186 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXXFQLRGSKAILNFPLEAGKCDSNAAVARECDSSA 419
            YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT               RG KA  NF +  G   + ++   +  ++A
Sbjct:   31 YRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQSSTVVDSPTAA 107          
The following BLAST results are available for this feature:
BLAST of CX296301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
EF109_ARATH6.137e-1242.71Ethylene-responsive transcription factor ERF109 OS... [more]
RAP22_ARATH8.015e-1256.67Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF81_ARATH8.015e-1259.32Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF76_ARATH1.047e-1156.90Ethylene-responsive transcription factor 11 OS=Ara... [more]
ERF1_ORYSJ1.367e-1146.34Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ABR1_ARATH1.367e-1137.50Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF78_ARATH3.978e-1156.90Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF83_ARATH5.195e-1153.33Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF79_ARATH6.785e-1143.59Ethylene-responsive transcription factor 8 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC05138E10SK FerrChloL1 Citrus clementina cDNA clone C05138E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296301 ID=CX296301; Name=CX296301; organism=Citrus clementina; type=EST; length=628bp
ACGAGGCCTCTTGCCGAATTCGGCACGAGGCGGAATTCGAACCCAAGCCT
AAAATATCTCCAAATTCATCCTCTCAATCGTCTCGCAAACCGTCGCTGAA
AATCTCAGTGCCTAAGAAAGCCGAAGGTCATCATTTCACCAACCGGAAAA
GCAAGGCCAAACCTGAGAGTTCGGAAGAAAAGCATTACAGAGGAGTTCGA
CGGAGGCCGTGGGGAAAGTACGCGGCCGAGATCCGAGATCCTACCCGGAG
AGGCGTACGTGTCTGGCTGGGGACATTTGACACGGCCATTGAAGCAGCTA
GGGCGTACGACCGTGCCGCTTTCCAGCTGCGCGGCTCGAAAGCGATCCTC
AACTTTCCTCTTGAAGCCGGCAAGTGCGACTCAAACGCTGCGGTGGCTAG
AGAGTGTGACTCGAGCGCCGAGGCTGGCGCGTGTGAAACGAAACGGAAGA
GGGACTGTGAAAGCGAAGAAGAGGAGAGAAAAGCCAAGGTGGTGAAAACG
GAGTCTGCGGATACAGTTAATGAATTTCCTTTGACGCCGGCGAGTTGCGC
GGCGTTTTGGGACTTGCATTTGGACTGGGACTGTGGTGTGAAAGGGATAT
TCAACGCCCCTCTACTGTCGCCGTTATC
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