CX296304 | Citrus Genome Database

Overview


Name	CX296304
Unique Name	CX296304
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	412

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.324e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3

Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 96.2857 bits (238), Expect = 5.201e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3

Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48

The following BLAST results are available for this feature:

BLAST of CX296304 vs. ExPASy Swiss-Prot

BLAST of CX296304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_LUPAL	2.324e-36	100.00	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	2.324e-36	100.00	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	2.324e-36	100.00	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	2.324e-36	100.00	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	2.324e-36	100.00	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	2.324e-36	100.00	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	2.324e-36	100.00	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	2.324e-36	100.00	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	2.324e-36	100.00	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	2.324e-36	100.00	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C05138F01SK FerrChloL1 Citrus clementina cDNA clone C05138F01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296304 ID=CX296304; Name=CX296304; organism=Citrus clementina; type=EST; length=412bp
ACGAGGCTCCAATTCTCTCGCTAAGAAACTTTTAAAAGATGCAGATCTTC
GTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCCGA
CACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTC
CGGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGC
ACCTTGGCCGATTACAATATCCAAAAGGAATCGACGCTTCATCTGGTGCT
TCGTCTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGA
CCATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCC
AAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTT
CGCCGGAAAGCA