CX296304

Overview
NameCX296304
Unique NameCX296304
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9336 contig Ccv1_Contig9336:31..442. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.724e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.750e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.724e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.750e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.476e-35
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.4337 bits (228), Expect = 7.510e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 9.763e-35
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

HSP 2 Score: 92.8189 bits (229), Expect = 5.750e-19
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.275e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.6633 bits (226), Expect = 1.281e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.665e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.6633 bits (226), Expect = 1.281e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.665e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.2781 bits (225), Expect = 1.673e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.665e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.2781 bits (225), Expect = 1.673e-18
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.665e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.2781 bits (225), Expect = 1.673e-18
Identity = 45/48 (93.75%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296304 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.846e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   39 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 266
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 89.7373 bits (221), Expect = 4.868e-18
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = 3 
Query:  267 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 410
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBIQ_CAMDR5.724e-3596.05Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN5.724e-3596.05Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY7.476e-3594.74Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_SHEEP9.763e-3594.74Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_EIMBO1.275e-3494.74Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_TRYBB1.665e-3494.74Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU1.665e-3494.74Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU1.665e-3494.74Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI1.665e-3494.74Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN4.846e-3493.42Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05138F01SK FerrChloL1 Citrus clementina cDNA clone C05138F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296304 ID=CX296304; Name=CX296304; organism=Citrus clementina; type=EST; length=412bp
ACGAGGCTCCAATTCTCTCGCTAAGAAACTTTTAAAAGATGCAGATCTTC
GTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCCGA
CACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTC
CGGACCAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGC
ACCTTGGCCGATTACAATATCCAAAAGGAATCGACGCTTCATCTGGTGCT
TCGTCTCCGTGGAGGCATGCAGATCTTCGTGAAAACCCTAACCGGCAAGA
CCATTACTCTCGAAGTTGAGAGCTCCGACACGATCGACAACGTCAAGGCC
AAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTT
CGCCGGAAAGCA
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