CX296307

Overview
NameCX296307
Unique NameCX296307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 2
Query:  158 AERSDSRYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 349
            A      Y+GVR R WGK+ +EIR P  R  R+WLG+++TA +AARA+D   F LRG  A  NFP
Sbjct:  130 AAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFP 194          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 28/58 (48.28%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  179 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD 352
            Y+GVR+R+WGK+V+EIR P+  AR+WLG++ ++ +AA A+D A   + G+SA+ N P+
Sbjct:   72 YRGVRQRRWGKWVAEIREPDGGARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLPE 129          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: RA211_ARATH (Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 39/126 (30.95%), Postives = 72/126 (57.14%), Query Frame = 2
Query:  137 KHVVEKPAERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFANSEPLRSQSPEQSVSELQTEYLSPSISEAT 514
            K   ++ ++ + +++ GVR+R  GK+V+EI+    + R+WLG+++TAE+AARA+D A   LRG + + NF ++ P+ +   SLK   +     Q    +  +   P  S+++    Y+S + S  T
Sbjct:    8 KQKTKEKSKGNKTKFVGVRQRPSGKWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFANHFPN-NSQLSLKIRNL-LHQKQSMKQQQQQQHKPVSSLTDCNINYISTATSLTT 131          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF84_ARATH (Ethylene-responsive transcription factor ERF084 OS=Arabidopsis thaliana GN=ERF084 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 2
Query:  179 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNF 346
            + GVRKR WG++ +EIR    R R WLG++DTAE+AARA+DAA   LRG  AK NF
Sbjct:  116 FMGVRKRPWGRWSAEIRDRIGRCRHWLGTFDTAEEAARAYDAAARRLRGTKAKTNF 171          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: EF107_ARATH (Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  179 YKGVRKRKWGKYVSEIRLPNSR-ARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 349
            Y+GVR+R WGK+ +EIR P  + +RIWLG++++   AARA+D A F LRGR A  NFP
Sbjct:  107 YRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFP 164          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2
Query:  176 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPD 364
            +++GVR+R WGK+ +EIR P  R RIWLG+++TAE+AA  +D A   LRG  A  NF   P +
Sbjct:  124 KFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQE 186          
The following BLAST results are available for this feature:
BLAST of CX296307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
EF103_ARATH5.095e-1150.77Ethylene-responsive transcription factor 6 OS=Arab... [more]
DRE2C_ARATH5.095e-1148.28Dehydration-responsive element-binding protein 2C ... [more]
RA211_ARATH6.655e-1130.95Ethylene-responsive transcription factor RAP2-11 O... [more]
ERF84_ARATH6.655e-1158.93Ethylene-responsive transcription factor ERF084 OS... [more]
EF107_ARATH6.655e-1155.17Ethylene-responsive transcription factor ERF107 OS... [more]
CRF3_ARATH8.691e-1149.21Ethylene-responsive transcription factor CRF3 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138F04SK FerrChloL1 Citrus clementina cDNA clone C05138F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296307 ID=CX296307; Name=CX296307; organism=Citrus clementina; type=EST; length=716bp
CCGAATTCGGCACGAGGGCAAACAGGAATACAAGAATCATCATCCAAATC
ACACTCAAAAGTTCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCA
AGAATACCCATAACCTGAAACCCTTTAAAAATGGTGAAGCACGTAGTCGA
AAAGCCTGCTGAGAGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAA
AGTGGGGGAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGT
ATCTGGCTGGGCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGA
CGCTGCTTTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGG
ACAACCCACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATT
CAAGCTGTGGCGGCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATC
GCCAGAACAGTCGGTGTCCGAATTGCAAACGGAGTACTTATCGCCGTCGA
TTTCTGAGGCTACGGTTCAGTTGGACAGCGATGGGGTTTTTGACGGGTCT
TTATTGGATCTTTTAACGGCATCGAGTTCCAGTAACTACCCTTCCGAATA
TGGGATATTTCCTGGGTTTGATGACCTGTCTAATGACATTTTTGCTCCGC
AACTCCCAGCTGTTGATTTTGCAGACGAGAATTTTGATGGGCTATTGTTG
AAATCAGATTCGTTTC
back to top