CX296307

Overview
NameCX296307
Unique NameCX296307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF20_ARATH (Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2
Query:  161 ERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSA----KFNFPDNPPDISGGRSLKPSEIQAVAA 415
            E   S+YKG+R+RKWGK+VSEIR+P +R R+WLGS+ TAE AA A D A +CL   S+     FNFP +    S   ++ P  IQ  A+
Sbjct:    8 ETDQSKYKGIRRRKWGKWVSEIRVPGTRQRLWLGSFSTAEGAAVAHDVAFYCLHRPSSLDDESFNFP-HLLTTSLASNISPKSIQKAAS 95          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: DRE1B_ARATH (Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.611e-15
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  149 EKPAERSDSR------YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 424
            +KPA R   R      Y+GVR+R  GK+VSE+R PN + RIWLG++ TAE AARA D A   LRGRSA  NF D+   +    S    +IQ  AA+ A
Sbjct:   32 KKPAGRKKFRETRHPIYRGVRQRNSGKWVSEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAA 129          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.410e-15
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  128 KMVKHVVEKPAERSDSR------YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 424
            K+     +KPA R   R      Y+GVR+R  GK+V E+R PN + RIWLG++ TAE AARA D A   LRGRSA  NF D+   +    S    EIQ  AA+ A
Sbjct:   28 KLATSCPKKPAGRKKFRETRHPIYRGVRQRNSGKWVCELREPNKKTRIWLGTFQTAEMAARAHDVAAIALRGRSACLNFADSAWRLRIPESTCAKEIQKAAAEAA 132          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.816e-15
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 2
Query:  179 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPD 352
            Y+GVR+R WGK+V+EIR P +R R+WLG++DTAE+AA A+D   F LRG +A+ NFP+
Sbjct:  187 YRGVRQRHWGKWVAEIRKPRNRTRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFPE 244          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 2
Query:   83 HHSSKSRIPIT*NPLKMVKHVVEKPAERSDS-----RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDN 355
            H   +    +   PL +    V K  E S S     +Y+GVR+R WGK+ +EIR P+   R+WLG+++TAE AARA+DAA    RG  AK NFP+N
Sbjct:   25 HKREREEFSLPPQPL-ITGSAVTKECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPEN 119          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF36_ARATH (Ethylene-responsive transcription factor ERF036 OS=Arabidopsis thaliana GN=ERF036 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 40/82 (48.78%), Postives = 51/82 (62.20%), Query Frame = 2
Query:  179 YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 424
            Y+GVR R WGK+VSEIR P  + RIWLG++ TA+ AARA D A   ++G SA  NFP+         S  P +IQ  AA+ A
Sbjct:   79 YRGVRMRSWGKWVSEIRQPRKKTRIWLGTFVTADMAARAHDVAALTIKGSSAVLNFPELASLFPRPASSSPHDIQTAAAEAA 160          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  161 ERSDSRYKGVRKRKWGKYVSEIRLPNSRA-RIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 349
            E  +  Y+GVR+R WGKY +EIR PN +  RIWLG+YDTA +A RA+D A F LRGR A  NFP
Sbjct:   82 EEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: DRE1A_ARATH (Dehydration-responsive element-binding protein 1A OS=Arabidopsis thaliana GN=DREB1A PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.596e-15
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  149 EKPAERSDSR------YKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAVAAQFA 424
            +KPA R   R      Y+GVR+R  GK+V E+R PN + RIWLG++ TAE AARA D A   LRGRSA  NF D+   +    S    +IQ  AA+ A
Sbjct:   35 KKPAGRKKFRETRHPIYRGVRRRNSGKWVCEVREPNKKTRIWLGTFQTAEMAARAHDVAALALRGRSACLNFADSAWRLRIPESTCAKDIQKAAAEAA 132          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 2
Query:  176 RYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFP 349
            RY+GVRKR WG+Y +EIR P  + R+WLG++DTAE+AARA+D A    RG  AK NFP
Sbjct:   24 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CX296307 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.921e-15
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  161 ERSDSRYKGVRKRKWGKYVSEIRLPNSRARIWLGSYDTAEKAARAFDAALFCLRGRSAKFNFPDNPPDISGGRSLKPSEIQAV 409
            ++  SRYKG+R+R WG++ +EIR P    R+WLG+++TAE+AARA+D     +RG  AK NFP+   + SG R  K   +Q V
Sbjct:   19 KKQSSRYKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPN---ESSGKRKAKAKTVQQV 98          
The following BLAST results are available for this feature:
BLAST of CX296307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
ERF20_ARATH2.611e-1548.31Ethylene-responsive transcription factor ERF020 OS... [more]
DRE1B_ARATH2.611e-1547.96Dehydration-responsive element-binding protein 1B ... [more]
DRE1C_ARATH3.410e-1545.71Dehydration-responsive element-binding protein 1C ... [more]
ERF53_ARATH5.816e-1558.62Ethylene-responsive transcription factor ERF053 OS... [more]
RAP26_ARATH7.596e-1543.75Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF36_ARATH7.596e-1548.78Ethylene-responsive transcription factor ERF036 OS... [more]
EF104_ARATH7.596e-1559.38Ethylene-responsive transcription factor ERF104 OS... [more]
DRE1A_ARATH7.596e-1546.94Dehydration-responsive element-binding protein 1A ... [more]
ERF78_ARATH9.921e-1560.34Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF73_ARATH9.921e-1545.78Ethylene-responsive transcription factor ERF073 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05138F04SK FerrChloL1 Citrus clementina cDNA clone C05138F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296307 ID=CX296307; Name=CX296307; organism=Citrus clementina; type=EST; length=716bp
CCGAATTCGGCACGAGGGCAAACAGGAATACAAGAATCATCATCCAAATC
ACACTCAAAAGTTCCGAGTCAACTCGATACAGCACCACTCGTCTAAATCA
AGAATACCCATAACCTGAAACCCTTTAAAAATGGTGAAGCACGTAGTCGA
AAAGCCTGCTGAGAGAAGTGACTCTCGTTACAAGGGTGTCCGAAAGCGAA
AGTGGGGGAAATATGTGTCTGAAATCAGACTACCCAACAGCCGTGCCCGT
ATCTGGCTGGGCTCCTACGACACAGCAGAAAAAGCAGCGCGTGCTTTCGA
CGCTGCTTTGTTTTGCTTACGTGGCCGATCAGCCAAGTTTAATTTCCCGG
ACAACCCACCCGACATATCAGGCGGGCGCTCACTTAAGCCATCTGAGATT
CAAGCTGTGGCGGCTCAGTTCGCGAATTCGGAGCCGCTGAGGAGTCAATC
GCCAGAACAGTCGGTGTCCGAATTGCAAACGGAGTACTTATCGCCGTCGA
TTTCTGAGGCTACGGTTCAGTTGGACAGCGATGGGGTTTTTGACGGGTCT
TTATTGGATCTTTTAACGGCATCGAGTTCCAGTAACTACCCTTCCGAATA
TGGGATATTTCCTGGGTTTGATGACCTGTCTAATGACATTTTTGCTCCGC
AACTCCCAGCTGTTGATTTTGCAGACGAGAATTTTGATGGGCTATTGTTG
AAATCAGATTCGTTTC
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