CX296312

Overview
NameCX296312
Unique NameCX296312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296312_ssr85 microsatellite CX296312_ssr85:85..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:425..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.449e-22
Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = -2
Query:  173 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604
            RE E+IH  WAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG F DPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   36 RELEVIHSTWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 192          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 70/162 (43.21%), Postives = 89/162 (54.94%), Query Frame = -2
Query:  179 QRFRECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIW---IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 613
            +R+RE ELIH RWAML  LG  T E L           W  AG     EG   YLG P       ++    ++V+++G IE  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLA  +  GF VQA+VTGKGP+ N   HL++P
Sbjct:   80 KRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPG-ESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = -2
Query:  173 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604
            RE E+IH RWAML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +VL++G +E  R +       +DP   LYPGG F DPLGLA DPE  A L++ E K+ RLAM +  GF +QA+VTGKGPL N A HL DP++
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWLKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDP---LYPGGSF-DPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.472e-22
Identity = 70/161 (43.48%), Postives = 91/161 (56.52%), Query Frame = -2
Query:  173 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604
            R+ E+IH RW ML  LG +  E     G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   96 RKLEVIHCRWTMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF-DPLGLADDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 69/162 (42.59%), Postives = 95/162 (58.64%), Query Frame = -2
Query:  176 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 610
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 69/162 (42.59%), Postives = 95/162 (58.64%), Query Frame = -2
Query:  176 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 610
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F DPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF-DPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.229e-22
Identity = 70/161 (43.48%), Postives = 92/161 (57.14%), Query Frame = -2
Query:  173 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  PE  A L++ E+K+ RLAM +  GF V A+VTGKGPL N A HL+DP++
Sbjct:   58 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF-DPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.217e-22
Identity = 69/164 (42.07%), Postives = 92/164 (56.10%), Query Frame = -2
Query:  179 QRFRECELIHGRWAMLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 613
            +R+RE ELIH R  +L  LG +T E L             W  AG     +G  +YLG P      +I   + ++V+++G +E  R         LDP   LYPG + FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N   HL++P
Sbjct:   99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPG-EAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.193e-22
Identity = 70/162 (43.21%), Postives = 93/162 (57.41%), Query Frame = -2
Query:  176 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 610
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ +   +V+++G IE  R         LD   ++YPGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.394e-22
Identity = 73/161 (45.34%), Postives = 94/161 (58.39%), Query Frame = -2
Query:  173 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IWI-EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604
            RE E+IH RWAML  LG +  E L   G+     +W  AG     EG   YLG Q L  + + L IW  +V+++G +E  R          DP   +YPGG F DPL LA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL++P++
Sbjct:   75 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF-DPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231          
The following BLAST results are available for this feature:
BLAST of CX296312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB22_CUCSA1.449e-2243.48Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLRE2.472e-2243.21Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PETSP2.472e-2244.10Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PETSP2.472e-2243.48Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_ORYSJ3.229e-2242.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.229e-2242.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA3.229e-2243.48Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNSA4.217e-2242.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_TOBAC7.193e-2243.21Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_SOYBN9.394e-2245.34Chlorophyll a-b binding protein, chloroplastic (Fr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138F10SK FerrChloL1 Citrus clementina cDNA clone C05138F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296312 ID=CX296312; Name=CX296312; organism=Citrus clementina; type=EST; length=659bp
AGATGACATGACTTCAAAATATGAAGCCATAGCATTCCCCTTAAGCTGTC
AAATGTTATAATTCTTTTTACAAGATAGGCGCATATAATAATAATAATAA
CAATAGTGCCAACTGCCAAGTACTGGAGGCTACACCAGAAATCTAAGAGA
TGAAGGTGTCAAGAATGGTTGTGTGAAGAGGATCGCTCAAGTGGGTAGCC
CAGTTGTTGAGAGGGCCTTTTCCGGTGACAACAGCTTGGACAGCGAAGCC
AAGGAATGCAACCATGGCAAGGCGGGCGTGCTTGATCTCTGCCAATTGAA
GGGTGGCTTTCTTTTCCGGGTCAGCGGCCAAGCCCAGAGGATCAAAAAAC
TTTCCTCCCGGGTAGAGTCTCTTCTCCGGGTCAAGCTCTGAGTTTCTTTG
GAACTCAATGTAGCCAATTACCAAAACCTCAATCCATATCAACGTTGTTA
TTGAGAATGGAAGTGGTTGCCCCAGGTATGATGATCCTTCAACTAACTCT
ACCTTGCCAGCGTCTTGCCAAGTAATCCCAGTGAGCCACTCAACAGTGAG
GGCACCGAGAGTAGCCAACATGGCCCAACGTCCATGAATGAGCTCACACT
CACGGAACCTCTGCAGACCAAAGACTTCAGTGTACGGCTGAAGCGGCGTG
GACTGCATG
back to top