CX296312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21 Identity = 68/161 (42.24%), Postives = 94/161 (58.39%), Query Frame = -2 Query: 173 RECELIHGRWAMLATLGALTVEWLT--GITWQDAG------KVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604 RE E+IH RWAML LG + E L G+ + +AG ++ G YLG P +L+ I +V+++G +E R +DP LYPGG F DPLGLA P+ A L++ EIK+ RLAM + GF VQA+VTGKGPL + A H++DP++ Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21 Identity = 70/160 (43.75%), Postives = 87/160 (54.37%), Query Frame = -2 Query: 176 RECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 604 RE E+IH RWAML LG + E L W AG EG Y G P +++ I +V+++G IE R LDP L PGG F DPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGP+ N HL+DP+ Sbjct: 96 RELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF-DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20 Identity = 70/178 (39.33%), Postives = 87/178 (48.88%), Query Frame = -2 Query: 152 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 616 L+ F + EL++GRWAML G L E T I W DAGK + SS TL IE ++ Y+E +R ++ DP + Y PGG F+PL A E K E+ + RLAM+AFLGF VQ VTGKGP N HLSDP H TI+ TF Sbjct: 89 LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPTQEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19 Identity = 68/168 (40.48%), Postives = 88/168 (52.38%), Query Frame = -2 Query: 209 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 616 L+ +RE ELIHGRWAMLA LG + TGI W +AG + G PFS TL+ ++L++G++E +R + DP+ + YPGGKFFDPL LA D +K L+LAEIKHARLAM+A L F +A GK PL Sbjct: 98 LKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.341e-19 Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = -2 Query: 173 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604 RE E+IH RWA+ LG + E L G+ W AG EG S+ G P +++ I +V+++G +E +DP LY GG F DPLGL DPE+ A L++ EIK+ RLAM + GF VQA+VTGKGP+ N A HL+DP++ Sbjct: 94 RELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF-DPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.270e-18 Identity = 63/174 (36.21%), Postives = 88/174 (50.57%), Query Frame = -2 Query: 152 ECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 601 + EL+H RWAML G E+LT I +W AG+ E + TTL IE+++IG+ E +R +++ P +L YPGG +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 105 QAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18 Identity = 68/177 (38.42%), Postives = 86/177 (48.59%), Query Frame = -2 Query: 155 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 616 L+ F + EL++GRWAML G L E T I W AGK E SS TL IE ++ Y+E +R ++ DP + Y PGG F+PL A E K EI + RLAM+AFLGF +Q VTGKGP +N H+SDP H TI+ T Sbjct: 88 LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18 Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = -2 Query: 209 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 616 L+ +RE ELIHGRWAM A LG + +GI W +AG + G PFS TL+ +++++G++E +R + DP+ + YPGGKFFDPL LA D EK L++AEIKHARLAM+A L F +A GK PL Sbjct: 93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18 Identity = 65/189 (34.39%), Postives = 94/189 (49.74%), Query Frame = -2 Query: 152 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 646 PL ++ L+ ++ EL+H RWAML G E LT I +W AG+ E + TTL +E+++IG+ E +R +++ P +L YPGG +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17 Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = -2 Query: 176 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 520 W AG EG YLG P +++ I +V+++G IE R LDP LYPG F DPLGLA DPE KA L++ EIK+ RLAM + GF VQA+VTGKGP+ N HL+DP+ Sbjct: 15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135 The following BLAST results are available for this feature:
BLAST of CX296312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296312 ID=CX296312; Name=CX296312; organism=Citrus clementina; type=EST; length=659bpback to top |