CX296312

Overview
NameCX296312
Unique NameCX296312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.093e-21
Identity = 68/161 (42.24%), Postives = 94/161 (58.39%), Query Frame = -2
Query:  173 RECELIHGRWAMLATLGALTVEWLT--GITWQDAG------KVELVEGSSYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604
            RE E+IH RWAML  LG +  E L   G+ + +AG      ++    G  YLG P      +L+ I   +V+++G +E  R         +DP   LYPGG F DPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL + A H++DP++
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF-DPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.570e-21
Identity = 70/160 (43.75%), Postives = 87/160 (54.37%), Query Frame = -2
Query:  176 RECELIHGRWAMLATLGALTVEWLTG-------ITWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 604
            RE E+IH RWAML  LG +  E L           W  AG     EG   Y G P      +++ I   +V+++G IE  R         LDP   L PGG F DPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF-DPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.733e-20
Identity = 70/178 (39.33%), Postives = 87/178 (48.88%), Query Frame = -2
Query:  152 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 616
            L+ F + EL++GRWAML   G L  E  T I       W DAGK +    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A   E K      E+ + RLAM+AFLGF VQ  VTGKGP  N   HLSDP H TI+ TF
Sbjct:   89 LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS-----------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGG-IFNPLNFAPTQEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.500e-19
Identity = 68/168 (40.48%), Postives = 88/168 (52.38%), Query Frame = -2
Query:  209 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 616
            L+ +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D +K   L+LAEIKHARLAM+A L F  +A   GK PL
Sbjct:   98 LKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.341e-19
Identity = 66/161 (40.99%), Postives = 90/161 (55.90%), Query Frame = -2
Query:  173 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 604
            RE E+IH RWA+   LG +  E L   G+      W  AG     EG  S+ G P      +++ I   +V+++G +E            +DP   LY GG F DPLGL  DPE+ A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:   94 RELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF-DPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.270e-18
Identity = 63/174 (36.21%), Postives = 88/174 (50.57%), Query Frame = -2
Query:  152 ECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 601
            + EL+H RWAML   G    E+LT I      +W  AG+ E    +           TTL  IE+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:  105 QAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.829e-18
Identity = 68/177 (38.42%), Postives = 86/177 (48.59%), Query Frame = -2
Query:  155 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSEL--------DPEKRLY---------PGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 616
            L+ F + EL++GRWAML   G L  E  T I       W  AGK E    SS           TL  IE ++  Y+E +R  ++        DP  + Y         PGG  F+PL  A   E K      EI + RLAM+AFLGF +Q  VTGKGP +N   H+SDP H TI+ T
Sbjct:   88 LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.694e-18
Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  209 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 616
            L+ +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP+ +                       YPGGKFFDPL LA          D EK   L++AEIKHARLAM+A L F  +A   GK PL
Sbjct:   93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.825e-18
Identity = 65/189 (34.39%), Postives = 94/189 (49.74%), Query Frame = -2
Query:  152 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELD-----------PEKRL------YPGGKFFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 646
            PL   ++   L+  ++ EL+H RWAML   G    E LT I      +W  AG+ E    +           TTL  +E+++IG+ E +R +++            P  +L      YPGG +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:   90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.833e-17
Identity = 58/125 (46.40%), Postives = 73/125 (58.40%), Query Frame = -2
Query:  176 WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 520
            W  AG     EG   YLG P      +++ I   +V+++G IE  R         LDP   LYPG  F DPLGLA DPE KA L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   15 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP---LYPGDAF-DPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
The following BLAST results are available for this feature:
BLAST of CX296312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB21_WHEAT2.093e-2142.24Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH3.570e-2143.75Chlorophyll a-b binding protein type I, chloroplas... [more]
CB24_ARATH6.733e-2039.33Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB4_SPIOL1.500e-1940.48Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB48_MAIZE3.341e-1940.99Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB12_PETHY1.270e-1836.21Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PEA2.829e-1838.42Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB4A_SOLLC3.694e-1838.69Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB12_SOLLC4.825e-1834.39Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB22_PINSY1.833e-1746.40Chlorophyll a-b binding protein type 2 member 2 (F... [more]

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Properties
Property NameValue
Genbank descriptionC05138F10SK FerrChloL1 Citrus clementina cDNA clone C05138F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296312 ID=CX296312; Name=CX296312; organism=Citrus clementina; type=EST; length=659bp
AGATGACATGACTTCAAAATATGAAGCCATAGCATTCCCCTTAAGCTGTC
AAATGTTATAATTCTTTTTACAAGATAGGCGCATATAATAATAATAATAA
CAATAGTGCCAACTGCCAAGTACTGGAGGCTACACCAGAAATCTAAGAGA
TGAAGGTGTCAAGAATGGTTGTGTGAAGAGGATCGCTCAAGTGGGTAGCC
CAGTTGTTGAGAGGGCCTTTTCCGGTGACAACAGCTTGGACAGCGAAGCC
AAGGAATGCAACCATGGCAAGGCGGGCGTGCTTGATCTCTGCCAATTGAA
GGGTGGCTTTCTTTTCCGGGTCAGCGGCCAAGCCCAGAGGATCAAAAAAC
TTTCCTCCCGGGTAGAGTCTCTTCTCCGGGTCAAGCTCTGAGTTTCTTTG
GAACTCAATGTAGCCAATTACCAAAACCTCAATCCATATCAACGTTGTTA
TTGAGAATGGAAGTGGTTGCCCCAGGTATGATGATCCTTCAACTAACTCT
ACCTTGCCAGCGTCTTGCCAAGTAATCCCAGTGAGCCACTCAACAGTGAG
GGCACCGAGAGTAGCCAACATGGCCCAACGTCCATGAATGAGCTCACACT
CACGGAACCTCTGCAGACCAAAGACTTCAGTGTACGGCTGAAGCGGCGTG
GACTGCATG
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