CX296312
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15 Identity = 67/187 (35.83%), Postives = 92/187 (49.20%), Query Frame = -2 Query: 134 LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI-------TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS*ISG 643 L Y E F + RE E+IH R AM A LG + E L+ + W AG EG YLG P +++ I +V+++G +E R + DP LYPG FD LGLA D E A L++ E+K+ RLAM + GF VQA+V+ K L N A HL ++ L + + G Sbjct: 88 LSAYPETFA--KNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDP---LYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13 Identity = 57/156 (36.54%), Postives = 74/156 (47.44%), Query Frame = -2 Query: 149 QRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN-SELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFI 613 +R R E+ HGR AMLA +GAL ++L W +A + ++ +G + I G E R E +YPG FDPL L D K+A EIK+ RLA+ A LGF VQ V G PL N A HL PL I D+ + Sbjct: 38 ERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQ------NAGIG-------LKEVAIFTAAYGVFEVARGVKENSDPTTIYPG---FDPLNLTTDYTKEA-----EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSIM 172 HSP 2 Score: 70.0922 bits (170), Expect = 1.151e-11 Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = -2 Query: 164 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 610 R R E+ HGR AML T+G + E L W +AG + V+G + + T W G +Q+ ELD R YPG FDPL L D + A E+K+ RLA+ A G Q + TG+ PL N + HL++P+ I Sbjct: 224 RMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAG--DSVDGLKLGFITMAIAAPTEYWRGQ---GGFNWQKG-ELD---RSYPG---FDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANI 355
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13 Identity = 57/171 (33.33%), Postives = 81/171 (47.37%), Query Frame = -2 Query: 155 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 616 L+ F + ++++GRWAML G L E LT AG + E G+ F+ ++ + Y+E +R + L P + YPG + F+PL A K+ E+ + RLAM+AFLGF VQ V GKGP N HL+DP H TI+ T Sbjct: 68 LRWFVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFAPLENKEK-----ELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQT 227 The following BLAST results are available for this feature:
BLAST of CX296312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296312 ID=CX296312; Name=CX296312; organism=Citrus clementina; type=EST; length=659bpback to top |