CX296312

Overview
NameCX296312
Unique NameCX296312
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length659
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX296312_ssr85 microsatellite CX296312_ssr85:85..99. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4991 contig Ccv1_Contig4991:425..1083. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 67/187 (35.83%), Postives = 92/187 (49.20%), Query Frame = -2
Query:  134 LQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI-------TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQRNSE------LDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFIS*ISG 643
            L  Y E F   + RE E+IH R AM A LG +  E L+ +        W  AG     EG   YLG P      +++ I   +V+++G +E  R +        DP   LYPG   FD LGLA D E  A L++ E+K+ RLAM +  GF VQA+V+ K  L N A HL   ++   L    + + G
Sbjct:   88 LSAYPETFA--KNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIARGPLGEVTDP---LYPGS--FDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 57/156 (36.54%), Postives = 74/156 (47.44%), Query Frame = -2
Query:  149 QRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRN-SELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTFI 613
            +R R  E+ HGR AMLA +GAL  ++L    W +A +      ++ +G          + I     G  E  R   E      +YPG   FDPL L  D  K+A     EIK+ RLA+ A LGF VQ  V G  PL N A HL  PL   I D+ +
Sbjct:   38 ERMRIAEVYHGRLAMLAVVGALVPDYLGKGIWYEAAQ------NAGIG-------LKEVAIFTAAYGVFEVARGVKENSDPTTIYPG---FDPLNLTTDYTKEA-----EIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADSIM 172          

HSP 2 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 53/149 (35.57%), Postives = 73/149 (48.99%), Query Frame = -2
Query:  164 RFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTI 610
            R R  E+ HGR AML T+G +  E L    W +AG  + V+G       +  +  T  W      G   +Q+  ELD   R YPG   FDPL L  D  + A     E+K+ RLA+ A  G   Q + TG+ PL N + HL++P+   I
Sbjct:  224 RMRVAEVFHGRLAMLCTVGCIVPELLGKGAWFEAG--DSVDGLKLGFITMAIAAPTEYWRGQ---GGFNWQKG-ELD---RSYPG---FDPLNLTTDYTRAA-----EVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPIGANI 355          
BLAST of CX296312 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.740e-13
Identity = 57/171 (33.33%), Postives = 81/171 (47.37%), Query Frame = -2
Query:  155 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 616
            L+ F + ++++GRWAML   G L  E LT      AG +   E     G+   F+ ++      +   Y+E +R                 +  L P +  YPG + F+PL  A    K+      E+ + RLAM+AFLGF VQ  V GKGP  N   HL+DP H TI+ T
Sbjct:   68 LRWFVQADVVNGRWAMLGVAGMLIPEVLT-----KAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPG-RVFNPLNFAPLENKEK-----ELANGRLAMLAFLGFLVQHNVHGKGPFENLQQHLADPWHNTIIQT 227          
The following BLAST results are available for this feature:
BLAST of CX296312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB2_MALDO3.823e-1535.83Chlorophyll a-b binding protein AB10, chloroplasti... [more]
LH18_EUGGR2.740e-1336.54Light-harvesting complex I LH38 proteins (Fragment... [more]
CB120_HORVU2.740e-1333.33Chlorophyll a-b binding protein 1B-20, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionC05138F10SK FerrChloL1 Citrus clementina cDNA clone C05138F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296312 ID=CX296312; Name=CX296312; organism=Citrus clementina; type=EST; length=659bp
AGATGACATGACTTCAAAATATGAAGCCATAGCATTCCCCTTAAGCTGTC
AAATGTTATAATTCTTTTTACAAGATAGGCGCATATAATAATAATAATAA
CAATAGTGCCAACTGCCAAGTACTGGAGGCTACACCAGAAATCTAAGAGA
TGAAGGTGTCAAGAATGGTTGTGTGAAGAGGATCGCTCAAGTGGGTAGCC
CAGTTGTTGAGAGGGCCTTTTCCGGTGACAACAGCTTGGACAGCGAAGCC
AAGGAATGCAACCATGGCAAGGCGGGCGTGCTTGATCTCTGCCAATTGAA
GGGTGGCTTTCTTTTCCGGGTCAGCGGCCAAGCCCAGAGGATCAAAAAAC
TTTCCTCCCGGGTAGAGTCTCTTCTCCGGGTCAAGCTCTGAGTTTCTTTG
GAACTCAATGTAGCCAATTACCAAAACCTCAATCCATATCAACGTTGTTA
TTGAGAATGGAAGTGGTTGCCCCAGGTATGATGATCCTTCAACTAACTCT
ACCTTGCCAGCGTCTTGCCAAGTAATCCCAGTGAGCCACTCAACAGTGAG
GGCACCGAGAGTAGCCAACATGGCCCAACGTCCATGAATGAGCTCACACT
CACGGAACCTCTGCAGACCAAAGACTTCAGTGTACGGCTGAAGCGGCGTG
GACTGCATG
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