CX296313

Overview
NameCX296313
Unique NameCX296313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.181e-23
Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 3
Query:  252 KKRKSRIKRVTRVPA---ISSKMAD--IPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAV 509
            K+RKS+ K+V  +PA   ++S+ +   +P D ++WRKYGQKPIKGSP PRGYY+CSS +GC ARK VER+  DP ML++TY  +HNH + +
Sbjct:  188 KRRKSQAKKVVCIPAPAAMNSRSSGEVVPSDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPI 278          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.132e-23
Identity = 51/90 (56.67%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  252 KKRKSRIKRVTRVPAI----SSKMADI--PPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAF 503
            KKR++  KRV  VP      S    ++  P D ++WRKYGQKPIKGSP+PRGYY+CSS +GCPARK VER+  DP  L++TY  DHNH F
Sbjct:   40 KKRRNVEKRVVSVPIADVEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPSKLMITYACDHNHPF 129          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.996e-21
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 3
Query:  222 GSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVH 512
            GS++ R   SK+RK + K+V  V A +     +  D ++WRKYGQKPIKGSP+PRGYY+CS+ +GC ARK VER   DP M IVTY  +HNH    H
Sbjct:  102 GSNTSR---SKRRKIQHKKVCHVAAEA-----LNSDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERNRSDPKMFIVTYTAEHNHPAPTH 190          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.784e-19
Identity = 46/88 (52.27%), Postives = 57/88 (64.77%), Query Frame = 3
Query:  264 SRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAA 527
            S+  R  R+   ++   DI  D Y WRKYGQK +KG+P+PR YYKC+++ GCP RKHVERA  D   +I TYEG HN     HD PAA
Sbjct:  342 SKTVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTI-GCPVRKHVERASHDMRAVITTYEGKHN-----HDVPAA 423          

HSP 2 Score: 70.0922 bits (170), Expect = 7.397e-12
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 3
Query:  327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            D Y+WRKYGQK +KGS +PR YYKC +   CP +K VER+L+  +  IV Y+G HNH
Sbjct:  185 DGYNWRKYGQKQVKGSENPRSYYKC-TFPNCPTKKKVERSLEGQITEIV-YKGSHNH 239          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 45/88 (51.14%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVH 512
            S+KRK++ KR            ++  D ++WRKYGQKPIKGSP+PR YY+CSS +GC ARK VER+  DP + IVTY G+H H    H
Sbjct:  144 SRKRKNQQKRTI----CHVTQENLSSDLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERSNLDPNIFIVTYTGEHTHPRPTH 227          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK50_ARATH (Probable WRKY transcription factor 50 OS=Arabidopsis thaliana GN=WRKY50 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHA 500
            +KK K +IK   RV   +    ++  D + WRKYG+K +K SPHPR YYKC SV GCP +K VER  DDP  +I TYEG HNH+
Sbjct:   90 NKKEKKKIKG--RVAFKTRSEVEVLDDGFKWRKYGKKMVKNSPHPRNYYKC-SVDGCPVKKRVERDRDDPSFVITTYEGSHNHS 170          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY1_ARATH (WRKY transcription factor 1 OS=Arabidopsis thaliana GN=WRKY1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.050e-18
Identity = 40/72 (55.56%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  282 TRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            +R+   +  + DI  D Y WRKYGQK +KGSP+PR YY+CSS  GCP +KHVER+  D  +LI TYEG H+H
Sbjct:  293 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDH 363          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK16_ARATH (Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.289e-18
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAF 503
            S+++ ++ KRV  V    S+ +D+    + WRKYGQKPIK SP+PR YY+C+S +GC ARK VER+  DP + ++TY  +HNH F
Sbjct: 1159 SRRKNNKEKRVVCVVDRGSRSSDL----WVWRKYGQKPIKSSPYPRSYYRCASSKGCFARKQVERSRTDPNVSVITYISEHNHPF 1239          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.908e-18
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 3
Query:  276 RVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            R  RV   +    DI  D Y WRKYGQK ++G+P+PR YYKC++  GCP RKHVERA  DP  +I TYEG H+H
Sbjct:  365 REPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTA-HGCPVRKHVERASHDPKAVITTYEGKHDH 437          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY4_ARATH (Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.022e-18
Identity = 42/81 (51.85%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  285 RVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAA 527
            R+   ++   D+  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  DP  ++ TYEG HN     HD PAA
Sbjct:  396 RIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHN-----HDLPAA 470          

HSP 2 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 3
Query:  315 DIPPDD-YSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            D P DD Y+WRKYGQK +KGS  PR YYKC++  GCP +K VER+LD  +  I+ Y+G HNH
Sbjct:  225 DKPADDGYNWRKYGQKQVKGSEFPRSYYKCTN-PGCPVKKKVERSLDGQVTEII-YKGQHNH 284          
The following BLAST results are available for this feature:
BLAST of CX296313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK14_ARATH4.181e-2353.85Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRK69_ARATH7.132e-2356.67Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK22_ARATH2.996e-2152.58WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRK33_ARATH4.784e-1952.27Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRK27_ARATH8.160e-1951.14Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK50_ARATH1.066e-1852.38Probable WRKY transcription factor 50 OS=Arabidops... [more]
WRKY1_ARATH4.050e-1855.56WRKY transcription factor 1 OS=Arabidopsis thalian... [more]
WRK16_ARATH5.289e-1848.24Probable WRKY transcription factor 16 OS=Arabidops... [more]
WRK20_ARATH6.908e-1855.41Probable WRKY transcription factor 20 OS=Arabidops... [more]
WRKY4_ARATH9.022e-1851.85Probable WRKY transcription factor 4 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC05138F11SK FerrChloL1 Citrus clementina cDNA clone C05138F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296313 ID=CX296313; Name=CX296313; organism=Citrus clementina; type=EST; length=531bp
ACGAGGCCGATCATGTGCCAAGTAGTATCAATTTCTCAGCCTCTGCCACA
AATTCTTTCATATCCTCGCTCACAGGCACAGCAGGGGATACCGACAGCAT
ACAACCTTCTTTCTCATCTGGGTTTCAATTTACCACACCATCATCAGCTG
GAAAGCCACCTCTGTCTTCTTCCTCGCTCAAGAGAAAGTGCAATTCCATG
GATGATGCTGCTCTCAAGTGTGGCTCATCTTCAGGGCGCTGCCATTGCTC
CAAGAAGAGAAAATCAAGGATTAAGAGAGTGACTAGAGTTCCAGCGATAA
GCTCTAAGATGGCTGATATTCCACCTGATGATTACTCCTGGAGAAAGTAT
GGCCAGAAACCCATCAAAGGTTCTCCTCATCCAAGGGGATATTACAAGTG
TAGTAGCGTGAGAGGCTGTCCAGCACGCAAACACGTGGAACGTGCACTTG
ACGATCCAATGATGCTGATTGTCACATACGAAGGTGATCACAACCACGCC
TTCGCTGTTCATGATGCACCTGCTGCTATGG
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