CX296313

Overview
NameCX296313
Unique NameCX296313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13748 contig Ccv1_Contig13748:631..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY2_ARATH (Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.539e-17
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  264 SRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAA 527
            +R  R  RV   ++   DI  D Y WRKYGQK +KG+P+PR YYKC++  GC  RKHVERA  D   +I TYEG HN     HD PAA
Sbjct:  467 TRAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTA-PGCTVRKHVERASHDLKSVITTYEGKHN-----HDVPAA 548          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK29_ARATH (Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 42/83 (50.60%), Postives = 55/83 (66.27%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            SK +KS+  +  RV     K  ++  D ++WRKYGQKPIKGSP+PR YY+CSS +GC ARK VER   +P    +TY  +HNH
Sbjct:  110 SKSKKSKKNQQKRVVE-QVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEKFTITYTNEHNH 191          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK26_ARATH (Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 43/81 (53.09%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  255 KRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            KR+  +K   RV   ++   DI  D Y WRKYGQK +KG+P+PR YYKC +  GC  RKHVERA  DP  +I TYEG H H
Sbjct:  212 KREENVKE-PRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKC-TFTGCFVRKHVERAFQDPKSVITTYEGKHKH 290          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.625e-17
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAF 503
            +KK+  +  R  R   ++    D   D Y WRKYGQK +K SP+PR YY+C++V GC  +K VER+ DDP +++ TYEG H H F
Sbjct:  196 AKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTV-GCGVKKRVERSSDDPSIVMTTYEGQHTHPF 279          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.625e-17
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAV----HDAPAAM 530
            D Y WRKYGQK +KG+PHPR YY+C+S  GCP RKH+E A+++   +I+TY+G HNH   V    H  P++M
Sbjct:  332 DGYRWRKYGQKMVKGNPHPRNYYRCTSA-GCPVRKHIETAVENTKAVIITYKGVHNHDMPVPKKRHGPPSSM 402          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY3_ARATH (Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.477e-17
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 3
Query:  285 RVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAA 527
            R+   ++   D+  D Y WRKYGQK +KG+P+PR YYKC++   C  RKHVERA  DP  ++ TYEG HN     HD PAA
Sbjct:  402 RIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PDCGVRKHVERAATDPKAVVTTYEGKHN-----HDVPAA 476          

HSP 2 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 3
Query:  312 ADIPPDD-YSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            AD P DD Y+WRKYGQK +KGS  PR YYKC+    CP +K VER+LD  +  I+ Y+G HNH
Sbjct:  245 ADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTH-PACPVKKKVERSLDGQVTEII-YKGQHNH 305          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK58_ARATH (Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.637e-17
Identity = 41/71 (57.75%), Postives = 47/71 (66.20%), Query Frame = 3
Query:  315 DIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAA 527
            D+  D Y WRKYGQK +KG+PHPR YYKC++   C  RKHVERA  D   +I TYEG HN     HD PAA
Sbjct:  303 DLLDDGYRWRKYGQKVVKGNPHPRSYYKCTT-PNCTVRKHVERASTDAKAVITTYEGKHN-----HDVPAA 367          

HSP 2 Score: 73.1738 bits (178), Expect = 8.738e-13
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  315 DIPPDD-YSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            D P DD Y+WRKYGQKPIKG  +PR YYKC+ V  CP +K VER+ D  +  I+ Y+G H+H
Sbjct:  163 DKPADDGYNWRKYGQKPIKGCEYPRSYYKCTHV-NCPVKKKVERSSDGQITQII-YKGQHDH 222          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.701e-16
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 3
Query:  252 KKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            KK+  + +R  RV  ++    D   D Y WRKYGQK +K SP+PR YY+C++ + C  +K VER+  DP ++I TYEG HNH
Sbjct:  112 KKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPSIVITTYEGKHNH 192          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.701e-16
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            +KK + + +R  RV  ++    D   D Y WRKYGQK +K SP+PR YY+C++ + C  +K VER+  DP ++I TYEG HNH
Sbjct:  147 TKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPTVVITTYEGQHNH 228          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK44_ARATH (WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.790e-16
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            SK+RK+  +      +  S  +D   D + WRKYGQK + G+ +PR YY+C+S   C ARKHVERA DDP   I TYEG HNH
Sbjct:  324 SKRRKNEKQSSEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSYYRCTSAN-CRARKHVERASDDPRAFITTYEGKHNH 405          

HSP 2 Score: 69.707 bits (169), Expect = 9.661e-12
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHA 500
            D Y+WRKYGQK +KGS  PR YYKC+  + CP +K VER+++  +  IV Y+G+HNH+
Sbjct:  166 DGYNWRKYGQKQVKGSECPRSYYKCTHPK-CPVKKKVERSVEGQVSEIV-YQGEHNHS 221          
The following BLAST results are available for this feature:
BLAST of CX296313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRKY2_ARATH1.539e-1752.27Probable WRKY transcription factor 2 OS=Arabidopsi... [more]
WRK29_ARATH2.010e-1750.60Probable WRKY transcription factor 29 OS=Arabidops... [more]
WRK26_ARATH2.010e-1753.09Probable WRKY transcription factor 26 OS=Arabidops... [more]
WRK48_ARATH2.625e-1745.88Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK32_ARATH2.625e-1752.78Probable WRKY transcription factor 32 OS=Arabidops... [more]
WRKY3_ARATH4.477e-1750.62Probable WRKY transcription factor 3 OS=Arabidopsi... [more]
WRK58_ARATH7.637e-1757.75Probable WRKY transcription factor 58 OS=Arabidops... [more]
WRK71_ARATH1.701e-1646.34Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK28_ARATH1.701e-1645.78Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK44_ARATH3.790e-1649.40WRKY transcription factor 44 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC05138F11SK FerrChloL1 Citrus clementina cDNA clone C05138F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296313 ID=CX296313; Name=CX296313; organism=Citrus clementina; type=EST; length=531bp
ACGAGGCCGATCATGTGCCAAGTAGTATCAATTTCTCAGCCTCTGCCACA
AATTCTTTCATATCCTCGCTCACAGGCACAGCAGGGGATACCGACAGCAT
ACAACCTTCTTTCTCATCTGGGTTTCAATTTACCACACCATCATCAGCTG
GAAAGCCACCTCTGTCTTCTTCCTCGCTCAAGAGAAAGTGCAATTCCATG
GATGATGCTGCTCTCAAGTGTGGCTCATCTTCAGGGCGCTGCCATTGCTC
CAAGAAGAGAAAATCAAGGATTAAGAGAGTGACTAGAGTTCCAGCGATAA
GCTCTAAGATGGCTGATATTCCACCTGATGATTACTCCTGGAGAAAGTAT
GGCCAGAAACCCATCAAAGGTTCTCCTCATCCAAGGGGATATTACAAGTG
TAGTAGCGTGAGAGGCTGTCCAGCACGCAAACACGTGGAACGTGCACTTG
ACGATCCAATGATGCTGATTGTCACATACGAAGGTGATCACAACCACGCC
TTCGCTGTTCATGATGCACCTGCTGCTATGG
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