CX296313

Overview
NameCX296313
Unique NameCX296313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 41/85 (48.24%), Postives = 50/85 (58.82%), Query Frame = 3
Query:  276 RVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAAM 530
            R  RV   +   A +  D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D  +LI TYEG+HNH       PAAM
Sbjct:  276 RKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL----PPAAM 356          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 37/81 (45.68%), Postives = 51/81 (62.96%), Query Frame = 3
Query:  255 KRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            K+K   K+  RV  ++    D   D Y WRKYGQK +K SP+PR YY+C++ + C  +K VER+  DP ++I TYE  HNH
Sbjct:  160 KKKEEKKKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSYQDPTVVITTYESQHNH 239          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  276 RVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            R  RV   +   A +  D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D  +LI TYEG+HNH
Sbjct:  296 RKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNH 369          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAV 509
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R L+D  +LI TYEG HNH   V
Sbjct:  236 DGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHPLPV 296          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 39/78 (50.00%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  264 SRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            +R  R  RV   ++   DI  D Y WRKYGQK +KG+P+PR YYKC++  GC   KHVERA DD   ++ TY G H H
Sbjct:  352 TRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTA-NGCTVTKHVERASDDFKSVLTTYIGKHTH 428          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 3
Query:  276 RVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            R  RV   +   A +  D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D  +LI TYEG+HNH
Sbjct:  281 RKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNH 354          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 3
Query:  225 SSSGRCHCSKKRKSRIKRVTRVPAISSKM---ADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVH 512
            +S G     K +K + +R  R P    K     D+  D Y WRKYGQK +K + HPR YY+C+  + C  +K VER  DDP M+I TYEG H H+ + H
Sbjct:  187 ASLGVVSSLKMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDK-CRVKKRVERLADDPRMVITTYEGRHLHSPSNH 284          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 3
Query:  258 RKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            RK   K+V +V  I+        D Y WRKYGQKP+K SP PR YY+C++   C  +K VER+  DP  +I TYEG H H
Sbjct:   96 RKQTKKKVPKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTT-WCDVKKRVERSFSDPSSVITTYEGQHTH 174          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.457e-15
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAP 521
            +KK   + +R  RV  ++    D   D Y WRKYGQK +K SP PR YY+C++   C  +K VER+  DP  ++ TYEG H H   +   P
Sbjct:  149 AKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTA-SCNVKKRVERSFRDPSTVVTTYEGQHTHISPLTSRP 238          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.191e-15
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 3
Query:  252 KKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            KK + RI++  R   ++    D   D Y WRKYGQK +K SP PR YY+C++ R C  +K VER+ DDP ++I TYEG H H
Sbjct:  124 KKAQKRIRQ-PRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSR-CTVKKRVERSSDDPSIVITTYEGQHCH 203          
The following BLAST results are available for this feature:
BLAST of CX296313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK42_ARATH6.465e-1648.24Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRKY8_ARATH8.444e-1645.68Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRKY6_ARATH8.444e-1650.00WRKY transcription factor 6 OS=Arabidopsis thalian... [more]
WRKY9_ARATH1.440e-1557.38Probable WRKY transcription factor 9 OS=Arabidopsi... [more]
WRK34_ARATH1.440e-1550.00Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK31_ARATH1.440e-1550.00Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK13_ARATH1.440e-1542.42Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRK68_ARATH2.457e-1547.50Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK23_ARATH2.457e-1540.66Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK57_ARATH4.191e-1547.56Probable WRKY transcription factor 57 OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138F11SK FerrChloL1 Citrus clementina cDNA clone C05138F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296313 ID=CX296313; Name=CX296313; organism=Citrus clementina; type=EST; length=531bp
ACGAGGCCGATCATGTGCCAAGTAGTATCAATTTCTCAGCCTCTGCCACA
AATTCTTTCATATCCTCGCTCACAGGCACAGCAGGGGATACCGACAGCAT
ACAACCTTCTTTCTCATCTGGGTTTCAATTTACCACACCATCATCAGCTG
GAAAGCCACCTCTGTCTTCTTCCTCGCTCAAGAGAAAGTGCAATTCCATG
GATGATGCTGCTCTCAAGTGTGGCTCATCTTCAGGGCGCTGCCATTGCTC
CAAGAAGAGAAAATCAAGGATTAAGAGAGTGACTAGAGTTCCAGCGATAA
GCTCTAAGATGGCTGATATTCCACCTGATGATTACTCCTGGAGAAAGTAT
GGCCAGAAACCCATCAAAGGTTCTCCTCATCCAAGGGGATATTACAAGTG
TAGTAGCGTGAGAGGCTGTCCAGCACGCAAACACGTGGAACGTGCACTTG
ACGATCCAATGATGCTGATTGTCACATACGAAGGTGATCACAACCACGCC
TTCGCTGTTCATGATGCACCTGCTGCTATGG
back to top