CX296313

Overview
NameCX296313
Unique NameCX296313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.191e-15
Identity = 34/78 (43.59%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  264 SRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            +R  +  R+        D P D Y WRKYGQK +KG+P+PR Y+KC+++  C  +KHVER  D+  +++ TY+G HNH
Sbjct:  287 TRTSKTQRIILQMESDEDNPNDGYRWRKYGQKVVKGNPNPRSYFKCTNIE-CRVKKHVERGADNIKLVVTTYDGIHNH 363          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.336e-15
Identity = 36/74 (48.65%), Postives = 44/74 (59.46%), Query Frame = 3
Query:  276 RVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            R  RV   +   A    D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D  +L  TYEG+HNH
Sbjct:  223 RKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNH 296          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 3
Query:  288 VPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            VP  +S  +    D + WRKYGQK  + +P PR Y++CS    CP +K V+R+ +DP +L+ TYEG HNH
Sbjct:  164 VPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK12_ARATH (Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.219e-14
Identity = 39/84 (46.43%), Postives = 49/84 (58.33%), Query Frame = 3
Query:  255 KRKSRIKRVTRVPAI---SSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            K K +I+R  R P     +    D+  D Y WRKYGQK +K S HPR YY+C+    C  +K VER  +D  M+I TYEG HNH
Sbjct:  119 KNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTH-NNCRVKKRVERLSEDCRMVITTYEGRHNH 201          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.592e-14
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 3
Query:  327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHA 500
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  DD  +LI TYEG H+H+
Sbjct:  228 DGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSILITTYEGTHSHS 285          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK45_ARATH (Probable WRKY transcription factor 45 OS=Arabidopsis thaliana GN=WRKY45 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.080e-14
Identity = 40/103 (38.83%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  192 NSMDDAALKCGSSSGRCHCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHA 500
            + +D++A    SS  +    KK+K   +R  R    +    DI  D Y WRKYGQK +K +P PR YYKC+   GC  +K V+R   D  +++ TY+G H HA
Sbjct:   24 HGVDNSAQPTTSSEEKPRSKKKKK---EREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTE-EGCRVKKQVQRQWGDEGVVVTTYQGVHTHA 122          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.080e-14
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 3
Query:  246 CSKKRKSRI--KRVTRV--PAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            C K+R+  +  ++V+RV     +S    +  D Y WRKYGQK  + +P PR Y+KC+    C  +K V+R+++D  +L+ TYEG+HNH
Sbjct:  116 CKKQREETVVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNH 203          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK55_ARATH (WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 3
Query:  207 AALKCGSSSGRCHCSKKRKSRIKRVT-RVPAISSKMADIPPDD-YSWRKYGQKPIKGSPHPRGYYKCS--SVRGCPARKHVERALDDPMMLIVTYEGDH 491
            A  + G+S       ++RK   +  T  V A+ +   D+PPDD ++WRKYGQK I GS  PR YY+C+   +  CPA+K V+R  DDP    VTY G H
Sbjct:  132 AVERSGASGSSTPRQRRRKDEGEEQTVLVAALRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSH 230          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK56_ARATH (Probable WRKY transcription factor 56 OS=Arabidopsis thaliana GN=WRKY56 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.548e-14
Identity = 34/85 (40.00%), Postives = 50/85 (58.82%), Query Frame = 3
Query:  243 HCSKKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            +C+K +  R   + R+   +    D+  D Y WRKYGQK +K + HPR YY+C +   C  +K V+R   DP +++ TYEG HNH
Sbjct:   87 NCNKGKGKRTLAMQRIAFHTRSDDDVLDDGYRWRKYGQKSVKNNAHPRSYYRC-TYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 170          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK52_ARATH (Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 6.051e-14
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 3
Query:  252 KKRKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCS--SVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            K  +SR+K+V  +PAI         D ++WRKYGQK I GS  PRGYY+C+     GC A K V+R+  D  ML +TY  +HNH
Sbjct: 1190 KHSESRVKKVVSIPAIDEG------DLWTWRKYGQKDILGSRFPRGYYRCAYKFTHGCKATKQVQRSETDSNMLAITYLSEHNH 1267          
The following BLAST results are available for this feature:
BLAST of CX296313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK10_ARATH4.191e-1543.59Probable WRKY transcription factor 10 OS=Arabidops... [more]
WRK47_ARATH9.336e-1548.65Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK18_ARATH1.219e-1445.71WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK12_ARATH1.219e-1446.43Probable WRKY transcription factor 12 OS=Arabidops... [more]
WRK72_ARATH1.592e-1456.90Probable WRKY transcription factor 72 OS=Arabidops... [more]
WRK45_ARATH2.080e-1438.83Probable WRKY transcription factor 45 OS=Arabidops... [more]
WRK40_ARATH2.080e-1439.77Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK55_ARATH2.716e-1442.42WRKY transcription factor 55 OS=Arabidopsis thalia... [more]
WRK56_ARATH3.548e-1440.00Probable WRKY transcription factor 56 OS=Arabidops... [more]
WRK52_ARATH6.051e-1446.43Probable WRKY transcription factor 52 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05138F11SK FerrChloL1 Citrus clementina cDNA clone C05138F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296313 ID=CX296313; Name=CX296313; organism=Citrus clementina; type=EST; length=531bp
ACGAGGCCGATCATGTGCCAAGTAGTATCAATTTCTCAGCCTCTGCCACA
AATTCTTTCATATCCTCGCTCACAGGCACAGCAGGGGATACCGACAGCAT
ACAACCTTCTTTCTCATCTGGGTTTCAATTTACCACACCATCATCAGCTG
GAAAGCCACCTCTGTCTTCTTCCTCGCTCAAGAGAAAGTGCAATTCCATG
GATGATGCTGCTCTCAAGTGTGGCTCATCTTCAGGGCGCTGCCATTGCTC
CAAGAAGAGAAAATCAAGGATTAAGAGAGTGACTAGAGTTCCAGCGATAA
GCTCTAAGATGGCTGATATTCCACCTGATGATTACTCCTGGAGAAAGTAT
GGCCAGAAACCCATCAAAGGTTCTCCTCATCCAAGGGGATATTACAAGTG
TAGTAGCGTGAGAGGCTGTCCAGCACGCAAACACGTGGAACGTGCACTTG
ACGATCCAATGATGCTGATTGTCACATACGAAGGTGATCACAACCACGCC
TTCGCTGTTCATGATGCACCTGCTGCTATGG
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