CX296313

Overview
NameCX296313
Unique NameCX296313
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 36/72 (50.00%), Postives = 42/72 (58.33%), Query Frame = 3
Query:  282 TRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            TRV   S        D   WRKYGQK  KG+P PR YY+C+    CP RK V+R  +D  +LI TYEG HNH
Sbjct:  177 TRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNH 248          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.032e-13
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 3
Query:  258 RKSRIKRVTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            ++ R ++V R+   +    D+  D Y WRKYGQK +K + HPR YY+C +   C  +K V+R   DP +++ TYEG HNH
Sbjct:   76 KEKRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRC-TYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 154          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK49_ARATH (Probable WRKY transcription factor 49 OS=Arabidopsis thaliana GN=WRKY49 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.761e-13
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 3
Query:  264 SRIKRVT-RVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            S++ R T +V   S+ M D   D Y WRKYGQK IK SP+PR YYKC++   C A+K VER++D+    I+TYEG H H
Sbjct:   96 SKVDRYTLKVKNNSNGMCD---DGYKWRKYGQKSIKNSPNPRSYYKCTNPI-CNAKKQVERSIDESNTYIITYEGFHFH 170          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = 3
Query:  327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            D Y WRKYGQK  + +P PR Y++CS    C  +K V+R+ +DP  L+ TYEG HNH
Sbjct:  147 DGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNH 203          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK59_ARATH (Probable WRKY transcription factor 59 OS=Arabidopsis thaliana GN=WRKY59 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 3
Query:  327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            D Y WRKYG+KPI GSP PR Y+KCSS   C  +K +ER  ++P  ++ TYEG HNH
Sbjct:  110 DGYKWRKYGKKPITGSPFPRHYHKCSS-PDCNVKKKIERDTNNPDYILTTYEGRHNH 165          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  315 DIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAPAAM 530
            D+  D + WRKYGQK +KG+ +PR YYKC + +GC  +K VER+  D   ++ TYEG HN     HD P A+
Sbjct:  325 DVLIDGFRWRKYGQKVVKGNTNPRSYYKC-TFQGCGVKKQVERSAADERAVLTTYEGRHN-----HDIPTAL 390          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK51_ARATH (Probable WRKY transcription factor 51 OS=Arabidopsis thaliana GN=WRKY51 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.542e-12
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 3
Query:  285 RVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            RV   +    D+  D + WRKYG+K +K + + R YYKCSS  GC  +K VER  DD   +I TYEG HNH
Sbjct:   97 RVAFRTRSKIDVMDDGFKWRKYGKKSVKNNINKRNYYKCSS-EGCSVKKRVERDGDDAAYVITTYEGVHNH 166          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRKY1_DICDI (Probable WRKY transcription factor protein 1 OS=Dictyostelium discoideum GN=wrky1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 4.337e-12
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 3
Query:  300 SSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNHAF 503
            S+ +++I  D Y WRKYGQK +KGS HPR YYKC + +GC  RK VER + D       Y+G+H H F
Sbjct:  806 SNNISNIVSDGYQWRKYGQKNVKGSLHPRHYYKC-TFQGCNVRKQVER-IGDTNQNSTVYKGEHCHGF 871          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK75_ARATH (Probable WRKY transcription factor 75 OS=Arabidopsis thaliana GN=WRKY75 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 35/86 (40.70%), Postives = 48/86 (55.81%), Query Frame = 3
Query:  246 CSKKRKSRIKR--VTRVPAISSKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPMMLIVTYEGDHNH 497
            CSK  +S  K+    R    +    DI  D Y WRKYGQK +K +  PR YY+C +  GC  +K V+R   D  +++ TYEG H+H
Sbjct:   39 CSKSVESSKKKGKKQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRC-TYGGCNVKKQVQRLTVDQEVVVTTYEGVHSH 123          
BLAST of CX296313 vs. ExPASy Swiss-Prot
Match: WRK53_ARATH (Probable WRKY transcription factor 53 OS=Arabidopsis thaliana GN=WRKY53 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 3
Query:  249 SKKRKSRIKRVTRVPAISSKMADIPPDD-YSWRKYGQKPIKGSPHPRGYYKCS--SVRGCPARKHVERALDDPMMLIVTYEGDHNHAFAVHDAP 521
            SKKRK   K   +V     +  + P DD +SWRKYGQK I G+  PR YY+C+  S + C A K V+R+  D  +  VTY G H  + A+   P
Sbjct:  132 SKKRKMLPKWSEKVRISPERGLEGPQDDVFSWRKYGQKDILGAKFPRSYYRCTHRSTQNCWATKQVQRSDGDATVFEVTYRGTHTCSQAITRTP 225          
The following BLAST results are available for this feature:
BLAST of CX296313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK61_ARATH7.903e-1450.00Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK24_ARATH1.032e-1341.25Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK49_ARATH1.761e-1350.63Probable WRKY transcription factor 49 OS=Arabidops... [more]
WRK60_ARATH6.691e-1350.88Probable WRKY transcription factor 60 OS=Arabidops... [more]
WRK59_ARATH6.691e-1356.14Probable WRKY transcription factor 59 OS=Arabidops... [more]
WRK25_ARATH6.691e-1347.22Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK51_ARATH2.542e-1247.89Probable WRKY transcription factor 51 OS=Arabidops... [more]
WRKY1_DICDI4.337e-1250.00Probable WRKY transcription factor protein 1 OS=Di... [more]
WRK75_ARATH2.152e-1140.70Probable WRKY transcription factor 75 OS=Arabidops... [more]
WRK53_ARATH6.262e-1141.49Probable WRKY transcription factor 53 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05138F11SK FerrChloL1 Citrus clementina cDNA clone C05138F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296313 ID=CX296313; Name=CX296313; organism=Citrus clementina; type=EST; length=531bp
ACGAGGCCGATCATGTGCCAAGTAGTATCAATTTCTCAGCCTCTGCCACA
AATTCTTTCATATCCTCGCTCACAGGCACAGCAGGGGATACCGACAGCAT
ACAACCTTCTTTCTCATCTGGGTTTCAATTTACCACACCATCATCAGCTG
GAAAGCCACCTCTGTCTTCTTCCTCGCTCAAGAGAAAGTGCAATTCCATG
GATGATGCTGCTCTCAAGTGTGGCTCATCTTCAGGGCGCTGCCATTGCTC
CAAGAAGAGAAAATCAAGGATTAAGAGAGTGACTAGAGTTCCAGCGATAA
GCTCTAAGATGGCTGATATTCCACCTGATGATTACTCCTGGAGAAAGTAT
GGCCAGAAACCCATCAAAGGTTCTCCTCATCCAAGGGGATATTACAAGTG
TAGTAGCGTGAGAGGCTGTCCAGCACGCAAACACGTGGAACGTGCACTTG
ACGATCCAATGATGCTGATTGTCACATACGAAGGTGATCACAACCACGCC
TTCGCTGTTCATGATGCACCTGCTGCTATGG
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