CX296315

Overview
NameCX296315
Unique NameCX296315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_AGRT5 (50S ribosomal protein L5 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplE PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.005e-43
Identity = 82/142 (57.75%), Postives = 107/142 (75.35%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLKT Y+ +I   ++E+FSY N+  +PK++KIV+N G+G+A  ++K    A  DLA I GQ+PV T+ARNSIA FK+RE  P+G  VTLRG  MY FLDRLIN+ LPR RDF+G+NP SFDG GN+++G+KE  VFPEI YD
Sbjct:    8 RLKTEYVSRIRGAMQEKFSYANVMMIPKLDKIVINMGVGEATADSKKPTIAAGDLAAIAGQKPVITKARNSIAGFKVREHMPIGAKVTLRGERMYEFLDRLINIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYD 149          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_PORPU (50S ribosomal protein L5, chloroplastic OS=Porphyra purpurea GN=rpl5 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.005e-43
Identity = 82/141 (58.16%), Postives = 109/141 (77.30%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y   +   L+EEF Y NIH+VP+  KI +N G+G+A+QNAK LE+++ +L LITGQ+P+ TRA+ SIA FKIRE  P+GI V LR + MYSFL++LINL LPR RDF+G++P SFDG GNY++G++EQ +FPEI YD
Sbjct:    5 LKEKYKTTVTQALKEEFQYENIHEVPRFTKITINRGLGEASQNAKALESSIQELTLITGQKPIVTRAKKSIAGFKIREEVPIGIVVHLRKDKMYSFLEKLINLTLPRIRDFRGISPKSFDGKGNYNLGLREQLIFPEIDYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_STRSY (50S ribosomal protein L5 OS=Streptococcus suis (strain 05ZYH33) GN=rplE PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43
Identity = 81/142 (57.04%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL ++VP L E+F+Y+++  VPK++KIV+N G+GDA  NAK LE A  +LALI+GQ+P+ T+A+ SIA F++REG  +G  VTLRG  MY FLD+L+ + LPR RDF GV   SFDG GNY++GVKEQ +FPEI +D
Sbjct:    4 RLKEKYLNEVVPALTEQFNYSSVMAVPKVDKIVLNMGVGDAVSNAKNLEKAAQELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_STRSV (50S ribosomal protein L5 OS=Streptococcus sanguinis (strain SK36) GN=rplE PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43
Identity = 81/142 (57.04%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL+++VP L E+F+Y+++  VPK++KIV+N G+GDA  NAK LE A  +LALI+GQ+P+ T+A+ SIA F++REG  +G  VTLRG  MY FLD+L+++ LPR RDF GV   SFDG GNY++GVKEQ +FPEI +D
Sbjct:    4 RLKEKYLKEVVPSLTEKFNYSSVMAVPKVDKIVLNMGVGDAVSNAKNLEKAAEELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLDKLVSVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_STRS2 (50S ribosomal protein L5 OS=Streptococcus suis (strain 98HAH33) GN=rplE PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43
Identity = 81/142 (57.04%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL ++VP L E+F+Y+++  VPK++KIV+N G+GDA  NAK LE A  +LALI+GQ+P+ T+A+ SIA F++REG  +G  VTLRG  MY FLD+L+ + LPR RDF GV   SFDG GNY++GVKEQ +FPEI +D
Sbjct:    4 RLKEKYLNEVVPALTEQFNYSSVMAVPKVDKIVLNMGVGDAVSNAKNLEKAAQELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLDKLVTVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_HERA2 (50S ribosomal protein L5 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplE PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43
Identity = 81/142 (57.04%), Postives = 107/142 (75.35%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL+ + P L ++F + +  QVP+I KIV+N G+G+A QN K +EAA+ DL +I GQ+PV TRA+ S+A FK+R+G P+G  VTLR + MY F DRL+NL LPR RDFQG++  SFDG GNYSIG++EQ +FPEI YD
Sbjct:    3 RLKDVYLKTVAPALFKDFGFKSPMQVPRITKIVINIGLGEALQNPKAVEAAIGDLTMIAGQKPVVTRAKKSLAAFKLRQGMPIGAMVTLRNDRMYDFYDRLVNLALPRIRDFQGLSRKSFDGRGNYSIGIREQIIFPEIEYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_DEIRA (50S ribosomal protein L5 OS=Deinococcus radiodurans GN=rplE PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43
Identity = 78/142 (54.93%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            +LKT Y +++ P L ++F Y+++  VP+IEKIVVN G+G + +++K ++ A  +LALIT Q+P+ T+A+ SI+ FK+R+G P+GI VTLRG  MY FL++LIN+GLPR RDF+G+NPN+FDG GNY++G+KEQ +FPEI YD
Sbjct:    3 QLKTKYNDQVRPALMQQFGYSSVMAVPRIEKIVVNEGLGSSKEDSKAIDKAAKELALITLQKPIITKAKKSISNFKLRQGMPVGIKVTLRGERMYVFLEKLINIGLPRIRDFRGINPNAFDGRGNYNLGIKEQLIFPEITYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_CLOK5 (50S ribosomal protein L5 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplE PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43
Identity = 82/142 (57.75%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+  Y +++VP L ++F Y NI Q PK+EKIV+N G+G+A  N K LE+A+NDL +ITGQ+PV TRA+ SIA FK+RE   +G  VTLR   MY F D+L+N+ LPR RDF GV+  SFDG GNYS+G+KEQ +FPEI YD
Sbjct:    4 RLQEKYEKEVVPALMDKFGYKNIMQAPKLEKIVINMGVGEAKDNPKVLESAVNDLTIITGQKPVLTRAKKSIANFKLRENMAIGCKVTLRKQYMYEFADKLMNVALPRVRDFSGVSDKSFDGRGNYSLGIKEQLIFPEIEYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_CLOK1 (50S ribosomal protein L5 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplE PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.312e-43
Identity = 82/142 (57.75%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+  Y +++VP L ++F Y NI Q PK+EKIV+N G+G+A  N K LE+A+NDL +ITGQ+PV TRA+ SIA FK+RE   +G  VTLR   MY F D+L+N+ LPR RDF GV+  SFDG GNYS+G+KEQ +FPEI YD
Sbjct:    4 RLQEKYEKEVVPALMDKFGYKNIMQAPKLEKIVINMGVGEAKDNPKVLESAVNDLTIITGQKPVLTRAKKSIANFKLRENMAIGCKVTLRKQYMYEFADKLMNVALPRVRDFSGVSDKSFDGRGNYSLGIKEQLIFPEIEYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_STRS7 (50S ribosomal protein L5 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rplE PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.714e-43
Identity = 81/142 (57.04%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y  +++P L E+F+YT++  VPK+EKIV+N G+GDA  NAK LE A  +LALI+GQ+P+ T+A+ SIA F++REG  +G  VTLRG  MY FLD+L+++ LPR RDF GV   SFDG GNY++GVKEQ +FPEI +D
Sbjct:    4 RLKEKYTNEVIPALTEKFNYTSVMAVPKVEKIVLNMGVGDAVSNAKNLEKAAAELALISGQKPLITKAKKSIAGFRLREGVAIGAKVTLRGERMYEFLDKLVSVSLPRVRDFHGVPTKSFDGRGNYTLGVKEQLIFPEINFD 145          
The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_AGRT51.005e-4357.7550S ribosomal protein L5 OS=Agrobacterium tumefaci... [more]
RK5_PORPU1.005e-4358.1650S ribosomal protein L5, chloroplastic OS=Porphyr... [more]
RL5_STRSY1.312e-4357.0450S ribosomal protein L5 OS=Streptococcus suis (st... [more]
RL5_STRSV1.312e-4357.0450S ribosomal protein L5 OS=Streptococcus sanguini... [more]
RL5_STRS21.312e-4357.0450S ribosomal protein L5 OS=Streptococcus suis (st... [more]
RL5_HERA21.312e-4357.0450S ribosomal protein L5 OS=Herpetosiphon aurantia... [more]
RL5_DEIRA1.312e-4354.9350S ribosomal protein L5 OS=Deinococcus radioduran... [more]
RL5_CLOK51.312e-4357.7550S ribosomal protein L5 OS=Clostridium kluyveri (... [more]
RL5_CLOK11.312e-4357.7550S ribosomal protein L5 OS=Clostridium kluyveri (... [more]
RL5_STRS71.714e-4357.0450S ribosomal protein L5 OS=Streptococcus equi sub... [more]

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Properties
Property NameValue
Genbank descriptionC05138G02SK FerrChloL1 Citrus clementina cDNA clone C05138G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bp
AAACTCATGGCGTTTCCTTCGCTGTTACCTCCTCTGCGTCGTCGTTTCAC
GGCCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCC
AAACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAG
GCATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAA
ACCACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTA
TACTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTG
GTATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAAT
GACTTGGCACTCATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAA
TTCCATTGCCACCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTG
TCACACTCAGAGGAAATATGATGTACTCATTTCTAGACCGTCTTATTAAT
TTGGGGCTTCCTAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTT
TGATGGACATGGGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCC
CGGAGATCAGGTATGATGC
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