CX296315
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_RHDSA (50S ribosomal protein L5, chloroplastic OS=Rhodomonas salina GN=rpl5 PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.268e-46 Identity = 86/141 (60.99%), Postives = 115/141 (81.56%), Query Frame = 3 Query: 195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 LKT Y EK+VPLL E F Y NIH+VPKI KI +N G+G+A++N K LE+++ +LA+I+GQ+PV T+A+ S+A FKIR+G P+GIAVTLR MMY+FL+RLI+L LPR RDF+G++ FDG GNY++G+KEQ +FPEI YD Sbjct: 5 LKTYYKEKVVPLLMETFEYKNIHEVPKITKITINRGLGEASKNNKALESSVQELAIISGQQPVITKAKKSVAGFKIRDGMPVGIAVTLRSKMMYAFLERLIHLSLPRIRDFKGISVQLFDGRGNYNLGLKEQLIFPEIEYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_OLTVI (50S ribosomal protein L5, chloroplastic OS=Oltmannsiellopsis viridis GN=rpl5 PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.268e-46 Identity = 88/142 (61.97%), Postives = 117/142 (82.39%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 R K YL+ IVP L++EF Y N HQVP+I+KIV+N G+GDA+QNAK L++++N+L++I GQR V TR++ +IA FK+R+ +GI+VTLRG+ MYSFLDRLINL LPR RDFQG++P SFDG GNYS+G++EQ +FPEI YD Sbjct: 4 RFKELYLQTIVPKLKDEFGYKNSHQVPEIKKIVINRGLGDASQNAKILDSSLNELSIIAGQRGVVTRSKKAIAGFKLRDKMAVGISVTLRGDRMYSFLDRLINLALPRIRDFQGISPKSFDGCGNYSLGLEEQLMFPEIDYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_CHLSY (50S ribosomal protein L5 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplE PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.656e-46 Identity = 88/144 (61.11%), Postives = 115/144 (79.86%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RL+ Y +++VP L EEF + +I QVP++ KIVVN G+G+A QNAK +EAA+NDLA ITGQ+PV TRA+ S+A+FK+R G P+G VTLRG+ MY FLDRL +L LPR RDF+GV+ +SFDG GNYS+G++EQ VFP+I YD Sbjct: 2 TVRLREKYQKEVVPALMEEFKFKSIMQVPRLVKIVVNVGVGEAVQNAKAIEAAVNDLATITGQKPVVTRAKKSVASFKLRAGMPIGAMVTLRGDRMYDFLDRLCSLALPRIRDFRGVSRSSFDGRGNYSLGLREQIVFPDIDYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_CHLAA (50S ribosomal protein L5 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplE PE=3 SV=1) HSP 1 Score: 185.652 bits (470), Expect = 1.656e-46 Identity = 88/144 (61.11%), Postives = 115/144 (79.86%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RL+ Y +++VP L EEF + +I QVP++ KIVVN G+G+A QNAK +EAA+NDLA ITGQ+PV TRA+ S+A+FK+R G P+G VTLRG+ MY FLDRL +L LPR RDF+GV+ +SFDG GNYS+G++EQ VFP+I YD Sbjct: 2 TVRLREKYQKEVVPALMEEFKFKSIMQVPRLVKIVVNVGVGEAVQNAKAIEAAVNDLATITGQKPVVTRAKKSVASFKLRAGMPIGAMVTLRGDRMYDFLDRLCSLALPRIRDFRGVSRSSFDGRGNYSLGLREQIVFPDIDYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYNPX (50S ribosomal protein L5 OS=Synechococcus sp. (strain WH8102) GN=rplE PE=3 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 2.163e-46 Identity = 88/141 (62.41%), Postives = 114/141 (80.85%), Query Frame = 3 Query: 195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 LK Y E I P L+++ S TNIH+VPK+ K+ VN G+G+AA NAK LEA++N+LA ITGQ+ V TRA+ +IA FKIR+G P+G AVTLRG+ MY+FL+RLINL LPR RDF+GV+P SFDG GNY++GV+EQ +FPEI +D Sbjct: 3 LKKRYRETIQPKLQKDLSLTNIHEVPKVVKVTVNRGLGEAAANAKSLEASVNELAQITGQKVVVTRAKKAIAAFKIRQGMPIGCAVTLRGDRMYAFLERLINLALPRIRDFRGVSPKSFDGRGNYTLGVREQIIFPEISFD 143
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_GEOKA (50S ribosomal protein L5 OS=Geobacillus kaustophilus GN=rplE PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.825e-46 Identity = 86/142 (60.56%), Postives = 111/142 (78.17%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 RLK YL ++VP L +F+Y +I QVPKIEKIV+N G+GDA QN K L++A+ +L LI GQRPV TRA+ SIA F++R+G P+G VTLRG MY FLD+LI++ LPR RDF+GV+ SFDG GNY++G+KEQ +FPEI YD Sbjct: 3 RLKEKYLNEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYD 144
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_SCEOB (50S ribosomal protein L5, chloroplastic OS=Scenedesmus obliquus GN=rpl5 PE=3 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 2.825e-46 Identity = 88/144 (61.11%), Postives = 114/144 (79.17%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLK Y EKIVP ++F Y NIH+VP ++KIV+N GIGDA+QNAK LE + +L++I GQ+ V TR++ SIA FKIR+ P+G++VTLRG+ MY FLDRLI+L LPR RDFQG+NP SFD +GNYS+G++EQ +FPEI YD Sbjct: 2 TQRLKKLYTEKIVPKFYKDFQYKNIHEVPSLKKIVINRGIGDASQNAKILETFLKELSIIAGQKGVITRSKKSIAGFKIRDKMPVGVSVTLRGDRMYGFLDRLIHLALPRVRDFQGINPKSFDKNGNYSLGLEEQLMFPEIEYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_ROSS1 (50S ribosomal protein L5 OS=Roseiflexus sp. (strain RS-1) GN=rplE PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 3.690e-46 Identity = 90/142 (63.38%), Postives = 112/142 (78.87%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 RLK Y ++VP L +EF Y ++ QVP+IEKIV+N G+G+A QN+K L+AA DLA I GQ+PV TRAR SIA FK+R+G P+G+ VTLRG M+SFLDRL+NL LPR RDF+GV+ SFDG GNYSIG++EQ VFPEI YD Sbjct: 4 RLKEKYQTEVVPALMQEFRYRSVMQVPRIEKIVLNIGLGEAIQNSKALDAATADLAAIAGQKPVITRARKSIAAFKVRQGMPIGVMVTLRGPRMWSFLDRLMNLVLPRLRDFRGVSRRSFDGRGNYSIGLREQIVFPEIDYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYNSC (50S ribosomal protein L5 OS=Synechococcus sp. (strain CC9605) GN=rplE PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.819e-46 Identity = 88/141 (62.41%), Postives = 114/141 (80.85%), Query Frame = 3 Query: 195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 LK Y E I P L+++ S TNIH+VPK+ K+ VN G+G+AA NAK LEA++N+LA ITGQ+ V TRA+ +IA FKIR+G P+G AVTLRG+ MY+FL+RLINL LPR RDF+GV+P SFDG GNY++GV+EQ +FPEI +D Sbjct: 3 LKKRYRETIQPKLQKDLSLTNIHEVPKVLKVTVNRGLGEAAANAKSLEASVNELAQITGQKVVVTRAKKAIAGFKIRQGMPIGCAVTLRGDRMYAFLERLINLALPRIRDFRGVSPKSFDGRGNYTLGVREQIIFPEISFD 143
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYNR3 (50S ribosomal protein L5 OS=Synechococcus sp. (strain RCC307) GN=rplE PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 4.819e-46 Identity = 85/141 (60.28%), Postives = 115/141 (81.56%), Query Frame = 3 Query: 195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 LK Y E I P L ++ +++N+HQVPK+ K+ VN G+G+AAQNAK LEA++ ++A ITGQ+PV TRA+ +IA FKIR+G P+G+AVTLRG+ MY+FL+RLINL LPR RDF+GV+ SFDG GNY++GV+EQ +FPEI +D Sbjct: 3 LKKRYREAIQPKLLKDLNFSNLHQVPKVVKVTVNRGLGEAAQNAKSLEASVEEIATITGQKPVVTRAKKAIAGFKIRQGMPIGVAVTLRGDRMYAFLERLINLALPRIRDFRGVSEKSFDGRGNYTLGVREQIIFPEISFD 143 The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bpback to top |