CX296315

Overview
NameCX296315
Unique NameCX296315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:48..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_NEPOL (50S ribosomal protein L5, chloroplastic OS=Nephroselmis olivacea GN=rpl5 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.293e-46
Identity = 87/142 (61.27%), Postives = 112/142 (78.87%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLKT YL  +VP LR++F + NIH+VP I+KIV+N G+GDA+QNAK L+ ++ +L  I GQR V TR++ +IA FKIR+  P+GI+VTLRG  MY+FLDRLINL LPR RDFQG++  SFDG GNYS+G+ EQ +FPEI YD
Sbjct:    4 RLKTFYLNSVVPKLRQQFHHRNIHEVPSIKKIVINRGLGDASQNAKLLDGSLQELTTIAGQRGVITRSKQAIAAFKIRQDMPVGISVTLRGERMYAFLDRLINLALPRIRDFQGMSTKSFDGQGNYSLGLNEQLMFPEINYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYNPW (50S ribosomal protein L5 OS=Synechococcus sp. (strain WH7803) GN=rplE PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 8.219e-46
Identity = 87/141 (61.70%), Postives = 113/141 (80.14%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y E I P L ++ S +N+H+VPK+ K+ VN G+G+AAQNAK LEA++N+LA ITGQ+ V TRA+ +IA FKIR+G P+G AVTLRG  MY+FL+RLINL LPR RDF+GV+P SFDG GNY++GV+EQ +FPEI +D
Sbjct:    3 LKQRYRETIQPKLLKDLSLSNVHEVPKVVKVTVNRGLGEAAQNAKSLEASVNELAQITGQKVVVTRAKKAIAGFKIRQGMPIGCAVTLRGERMYAFLERLINLALPRIRDFRGVSPKSFDGRGNYTLGVREQIIFPEISFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LISW6 (50S ribosomal protein L5 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 84/142 (59.15%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LISMO (50S ribosomal protein L5 OS=Listeria monocytogenes GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 84/142 (59.15%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LISMH (50S ribosomal protein L5 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 84/142 (59.15%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LISMF (50S ribosomal protein L5 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 84/142 (59.15%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LISMC (50S ribosomal protein L5 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 84/142 (59.15%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LISIN (50S ribosomal protein L5 OS=Listeria innocua GN=rplE PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 84/142 (59.15%), Postives = 114/142 (80.28%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL++IVP L  +F+Y ++ +VPKI+KIV+N G+GDA  NAK L++A+ +LALITGQ+PV T+A+NSIA F++REG P+G  VTLRG  MY FLD+L+ + LPR RDF+GV+  +FDG GNY++GV+EQ +FPEI YD
Sbjct:    3 RLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BACST (50S ribosomal protein L5 OS=Bacillus stearothermophilus GN=rplE PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 84/142 (59.15%), Postives = 112/142 (78.87%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y++++VP L  +F+Y +I QVPKIEKIV+N G+GDA QN K L++A+ +L LI GQRPV TRA+ SIA F++R+G P+G  VTLRG  MY FLD+LI++ LPR RDF+GV+  +FDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLKEKYVKEVVPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQRPVVTRAKKSIAGFRLRQGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFRGVSKKAFDGRGNYTLGIKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_DICT6 (50S ribosomal protein L5 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplE PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.402e-45
Identity = 86/141 (60.99%), Postives = 108/141 (76.60%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y++++VP + ++F Y N   VPKIEKIVVN G+ +A QN   +EAA  DLA+ITGQRP+  +AR SIA F +R+G P+G+ VTLRG  MY+FL +LINL LPR RDF GV+PNSFDG GNYS+G+KEQ VFPEI YD
Sbjct:    4 LKQKYIQEVVPAMMKKFGYKNPMAVPKIEKIVVNIGVSEAVQNPGAIEAAARDLAIITGQRPIVRKARKSIANFHLRKGMPIGVKVTLRGERMYAFLYKLINLALPRVRDFSGVSPNSFDGRGNYSLGLKEQLVFPEIEYD 144          
The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK5_NEPOL6.293e-4661.2750S ribosomal protein L5, chloroplastic OS=Nephros... [more]
RL5_SYNPW8.219e-4661.7050S ribosomal protein L5 OS=Synechococcus sp. (str... [more]
RL5_LISW61.073e-4559.1550S ribosomal protein L5 OS=Listeria welshimeri se... [more]
RL5_LISMO1.073e-4559.1550S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISMH1.073e-4559.1550S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISMF1.073e-4559.1550S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISMC1.073e-4559.1550S ribosomal protein L5 OS=Listeria monocytogenes... [more]
RL5_LISIN1.073e-4559.1550S ribosomal protein L5 OS=Listeria innocua GN=rp... [more]
RL5_BACST1.073e-4559.1550S ribosomal protein L5 OS=Bacillus stearothermop... [more]
RL5_DICT61.402e-4560.9950S ribosomal protein L5 OS=Dictyoglomus thermophi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G02SK FerrChloL1 Citrus clementina cDNA clone C05138G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bp
AAACTCATGGCGTTTCCTTCGCTGTTACCTCCTCTGCGTCGTCGTTTCAC
GGCCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCC
AAACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAG
GCATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAA
ACCACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTA
TACTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTG
GTATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAAT
GACTTGGCACTCATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAA
TTCCATTGCCACCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTG
TCACACTCAGAGGAAATATGATGTACTCATTTCTAGACCGTCTTATTAAT
TTGGGGCTTCCTAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTT
TGATGGACATGGGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCC
CGGAGATCAGGTATGATGC
back to top