CX296315

Overview
NameCX296315
Unique NameCX296315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:48..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_RICBR (50S ribosomal protein L5 OS=Rickettsia bellii (strain RML369-C) GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 75/142 (52.82%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            R K  Y ++I+  L++EFSY N H++P IEKIV+N G+G+A  ++K ++ A+NDL LI+GQ+P  T AR SIATFK+R+G  +G  VTLR + MY FL+RL+ + LPR ++F+G +  SFDG GN++ G+KEQ VFPEI YD
Sbjct:    3 RFKELYQKEIISNLQKEFSYKNKHEIPAIEKIVINMGVGEAIADSKVIDKAVNDLTLISGQKPFVTSARKSIATFKLRDGMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_RICB8 (50S ribosomal protein L5 OS=Rickettsia bellii (strain OSU 85-389) GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 75/142 (52.82%), Postives = 106/142 (74.65%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            R K  Y ++I+  L++EFSY N H++P IEKIV+N G+G+A  ++K ++ A+NDL LI+GQ+P  T AR SIATFK+R+G  +G  VTLR + MY FL+RL+ + LPR ++F+G +  SFDG GN++ G+KEQ VFPEI YD
Sbjct:    3 RFKELYQKEIISNLQKEFSYKNKHEIPAIEKIVINMGVGEAIADSKVIDKAVNDLTLISGQKPFVTSARKSIATFKLRDGMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PSEHT (50S ribosomal protein L5 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 74/142 (52.11%), Postives = 107/142 (75.35%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            +L   Y +K+V  L+E+F ++++ QVP IEKI +N G+G+A  + K L+ A+ DLA I+GQ+P+ T+AR S+A FK+REG P+G  VTLRG  M+ F +RL+++ +PR RDF+GV+  SFDG GNYS+GV+EQ +FPEI YD
Sbjct:    3 KLHEVYKDKVVAELQEKFGFSSVMQVPLIEKITLNMGVGEALADKKILDNAVADLAAISGQKPLITKARKSVAGFKVREGYPIGCKVTLRGERMWDFFERLVSIAIPRIRDFRGVSAKSFDGRGNYSMGVREQIIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROAC (50S ribosomal protein L5 OS=Propionibacterium acnes GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 78/147 (53.06%), Postives = 104/147 (70.75%), Query Frame = 3
Query:  177 AEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            A +  RLK  Y E+I   ++EEF Y N   +P +EKIVVN G+GDAA ++K ++ A+ D+  ITGQ+P  T+AR SIA FK+REG+P+G  VTLRG+ M+ F DRL+ L LPR RDF+G+N N FDG GNY+ G+ EQ +F EI  D
Sbjct:    7 AHEMPRLKKQYREQIRAAMQEEFGYRNPMLIPGLEKIVVNMGVGDAAHDSKVMDGAIRDITAITGQKPQVTKARKSIAQFKLREGQPIGCHVTLRGDRMWEFADRLLTLALPRIRDFRGLNSNQFDGKGNYTFGLSEQVMFLEIDQD 153          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_METCA (50S ribosomal protein L5 OS=Methylococcus capsulatus GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 76/142 (53.52%), Postives = 103/142 (72.54%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+  Y EK+VP L   F Y ++ +VP++ KI +N G+G+A  + K L+ A+ ++  I GQ+P+ T AR SIA FKIREG P+G  VTLR   MY FLDRLI++ +PR RDF+G+NP +FDG GNYS+GV+EQ +FPEI YD
Sbjct:    3 RLENHYKEKVVPELMARFGYKSVMEVPRLVKITLNMGVGEAVADKKILQNAVENMQAIGGQKPIVTHARKSIAGFKIREGMPVGCKVTLRRARMYEFLDRLISVAIPRIRDFRGLNPKAFDGRGNYSMGVREQIIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_FRAP2 (50S ribosomal protein L5 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 78/142 (54.93%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y  ++V  L+ E +  NI +VP I+KI +N G+GDAA++ K +  A+NDL  I GQ+PV T ++ SIA FKIR+G P+G  VTLRG  MY FLDRLI + +PR RDF+G++  SFDG GNYS+G+KEQ  FPEI YD
Sbjct:    3 RLKDYYQNEVVAKLKSELNLDNIMEVPAIKKITLNMGVGDAAKDKKIMTFALNDLTAIAGQKPVVTMSKKSIAGFKIRDGWPIGAKVTLRGERMYEFLDRLITIAIPRIRDFRGLSAKSFDGRGNYSLGMKEQISFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_DESVM (50S ribosomal protein L5 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 74/142 (52.11%), Postives = 105/142 (73.94%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+  Y EK+VP+L++EF+YT+  QVP IEK+ +N G+G A+QN K +E A+ +L  I GQ+ V TRA+ SIA+FK+REG P+G  VTLR   M+ FLD+L+N  LPR RDF+G+    FDG GN+++G+KE ++FPE+  D
Sbjct:    3 RLEQIYREKVVPVLQKEFNYTSSMQVPGIEKVSLNIGLGAASQNNKLMEEAIKELTAIAGQKAVVTRAKKSIASFKLREGMPIGCRVTLRKERMWDFLDKLMNFALPRVRDFRGIPDRGFDGRGNFTLGIKEHTIFPELEVD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_COREF (50S ribosomal protein L5 OS=Corynebacterium efficiens GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 74/144 (51.39%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            T RLK+ Y ++I P L+ +F ++N+ Q+P + K+VVN G+GDAA+++K +  A+ DL  ITGQ+P   RA+ SIA FK+REG P+G  VTLRG+ M+ FLDRL+ + LPR RDF+G++   FDGHGNY+ G+ EQ++F EI  D
Sbjct:    6 TPRLKSRYQDEIRPNLQTQFEFSNVMQIPGVTKVVVNMGVGDAARDSKMINGALEDLTAITGQKPQLRRAKKSIANFKLREGMPIGAKVTLRGDRMWEFLDRLLTVALPRIRDFRGLSDQQFDGHGNYTFGLTEQTMFYEIDVD 149          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BIFAA (50S ribosomal protein L5 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplE PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.705e-39
Identity = 78/148 (52.70%), Postives = 108/148 (72.97%), Query Frame = 3
Query:  174 EAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            EA  T RLK  Y E+IVP L +EF Y+N  QV +++K+VV+ G+G AA+++K +E A+ DL LITGQ+P  T+A+ S+A F +REG+ +G  VTLRG  M+ FLDRL+ + LPR RDF+G+N + FDG GNY+ G+ EQS+F EI  D
Sbjct:    7 EAPATPRLKQKYNEQIVPELEKEFHYSNPMQVARVQKVVVSMGVGAAARDSKLIEGAVKDLTLITGQKPKITKAKKSVAQFHLREGQAIGAYVTLRGERMWEFLDRLLTMALPRIRDFRGINGDQFDGQGNYNFGLTEQSMFHEIDPD 154          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_POLNA (50S ribosomal protein L5 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rplE PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.451e-39
Identity = 77/142 (54.23%), Postives = 101/142 (71.13%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+  Y EKI P L E+F YT   QVP+I KI +N G+ +A  + K ++ A+ D+A I GQ+PV T+A+ +IA FKIRE  P+G  VTLRG  MY FLDR + + LPR RDF+G++  +FDG GNY+IGVKEQ +FPEI YD
Sbjct:    3 RLQDQYREKIAPALIEKFGYTTPMQVPRITKITLNMGVSEAVADKKVMDNAVADMAKIAGQKPVVTKAKKAIAGFKIREDLPIGCMVTLRGVQMYEFLDRFVTVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYD 144          
The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_RICBR5.705e-3952.8250S ribosomal protein L5 OS=Rickettsia bellii (str... [more]
RL5_RICB85.705e-3952.8250S ribosomal protein L5 OS=Rickettsia bellii (str... [more]
RL5_PSEHT5.705e-3952.1150S ribosomal protein L5 OS=Pseudoalteromonas halo... [more]
RL5_PROAC5.705e-3953.0650S ribosomal protein L5 OS=Propionibacterium acne... [more]
RL5_METCA5.705e-3953.5250S ribosomal protein L5 OS=Methylococcus capsulat... [more]
RL5_FRAP25.705e-3954.9350S ribosomal protein L5 OS=Francisella philomirag... [more]
RL5_DESVM5.705e-3952.1150S ribosomal protein L5 OS=Desulfovibrio vulgaris... [more]
RL5_COREF5.705e-3951.3950S ribosomal protein L5 OS=Corynebacterium effici... [more]
RL5_BIFAA5.705e-3952.7050S ribosomal protein L5 OS=Bifidobacterium adoles... [more]
RL5_POLNA7.451e-3954.2350S ribosomal protein L5 OS=Polaromonas naphthalen... [more]

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Properties
Property NameValue
Genbank descriptionC05138G02SK FerrChloL1 Citrus clementina cDNA clone C05138G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bp
AAACTCATGGCGTTTCCTTCGCTGTTACCTCCTCTGCGTCGTCGTTTCAC
GGCCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCC
AAACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAG
GCATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAA
ACCACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTA
TACTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTG
GTATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAAT
GACTTGGCACTCATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAA
TTCCATTGCCACCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTG
TCACACTCAGAGGAAATATGATGTACTCATTTCTAGACCGTCTTATTAAT
TTGGGGCTTCCTAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTT
TGATGGACATGGGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCC
CGGAGATCAGGTATGATGC
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