CX296315

Overview
NameCX296315
Unique NameCX296315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:48..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYNE7 (50S ribosomal protein L5 OS=Synechococcus elongatus (strain PCC 7942) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.123e-45
Identity = 84/141 (59.57%), Postives = 112/141 (79.43%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LKT Y + IVP L +EF YTNIHQVPK+ K+ +N G+G+ AQNAK LE+++ ++A I GQ+PV TRA+ +IA FKIR G P+G+ VTLRG+   +FL+RLINL LPR RDF+G++P SFDG GNY++G++EQ +FPEI YD
Sbjct:    3 LKTKYRDIIVPKLMKEFGYTNIHQVPKVVKVTINRGLGEGAQNAKALESSLAEIAKIAGQKPVVTRAKKAIAGFKIRAGMPVGLMVTLRGDRRDAFLERLINLSLPRIRDFRGISPRSFDGRGNYTLGLREQLIFPEITYD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROM3 (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.123e-45
Identity = 87/141 (61.70%), Postives = 112/141 (79.43%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y E I P L ++ S +NIH+VPK+ KI VN G+G+AAQNAK LEA++ +LA ITGQ+ V TRA+ +IA FKIR+G P+G AVTLRG  MY+FL+RLINL LPR RDF+GV+P SFDG GNY++GV+EQ +FPE+ +D
Sbjct:    3 LKQRYRETIQPKLLKDLSLSNIHEVPKVLKITVNRGLGEAAQNAKSLEASITELATITGQKVVVTRAKKAIAGFKIRQGMPIGCAVTLRGERMYAFLERLINLALPRIRDFRGVSPKSFDGRGNYTLGVREQLIFPEVSFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_GEOSW (50S ribosomal protein L5 OS=Geobacillus sp. (strain WCH70) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.123e-45
Identity = 84/142 (59.15%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL+++ P L  +F+Y +I QVPKIEKIV+N G+GDA QN K L++A+ +L LI GQ+PV TRA+ SIA F++R G P+G  VTLRG  MY FLD+LI++ LPR RDF+GV+  SFDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLKEKYLKEVTPALMSKFNYKSIMQVPKIEKIVINMGVGDAVQNPKALDSAVEELTLIAGQKPVVTRAKKSIAGFRLRAGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BREBN (50S ribosomal protein L5 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.123e-45
Identity = 82/142 (57.75%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y  +IVP L  +F+YT+I QVPK+EKI++N G+G+A  NAK L+ A+ DL +I GQ+PV T+A+ SIA FK+REG P+G  VTLRG  MY FLD+L+N+ LPR RDF+G++  +FDG GNY++G+KEQ +FPEI YD
Sbjct:    4 RLKEKYTSEIVPSLMSKFNYTSIMQVPKVEKIIINMGVGEAVANAKSLDTAIEDLQIIAGQKPVVTKAKKSIAGFKLREGMPIGAKVTLRGERMYHFLDKLMNVSLPRVRDFRGISSKAFDGRGNYTLGLKEQLIFPEIEYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_CHAVU (50S ribosomal protein L5, chloroplastic OS=Chara vulgaris GN=rpl5 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.123e-45
Identity = 82/142 (57.75%), Postives = 112/142 (78.87%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL+ +VP L ++F YTNIHQ+P ++KIV+NCG G+A+QN+K LE  + DL++I  Q+P+ TRAR +IA F+IR+  P+G+ VTLRG  MY+FLDRLI+L LPR +DFQG+N  SFDG+GN+  G++EQ +FPEI YD
Sbjct:    4 RLKKFYLDNVVPDLYQKFEYTNIHQLPYLKKIVINCGFGEASQNSKFLEGTIKDLSIIASQKPIVTRARKAIAGFQIRKKMPVGVCVTLRGETMYAFLDRLIHLALPRIKDFQGLNWKSFDGYGNFHFGIREQLIFPEIHYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROMS (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain AS9601) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 86/141 (60.99%), Postives = 109/141 (77.30%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y E I P L ++    NIHQVPK+ K+ VN G+G+AA N+K LEA++N++A ITGQ+ + TRA+ +IA FKIREG P+G  VTLRG+ MYSFL+R INL LPR RDF+GVNP SFDG GNY++GVKEQ +FPEI +D
Sbjct:    3 LKNRYKESIRPKLLKDLGLKNIHQVPKVVKVNVNRGLGEAASNSKALEASLNEMATITGQKALVTRAKKAIAGFKIREGMPIGCTVTLRGDRMYSFLERFINLALPRIRDFRGVNPKSFDGRGNYTVGVKEQLIFPEISFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROM9 (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 86/141 (60.99%), Postives = 109/141 (77.30%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y E I P L ++    NIHQVPK+ K+ VN G+G+AA N+K LEA++N++A ITGQ+ + TRA+ +IA FKIREG P+G  VTLRG+ MYSFL+R INL LPR RDF+GVNP SFDG GNY++GVKEQ +FPEI +D
Sbjct:    3 LKNRYKESIRPKLLKDLGLKNIHQVPKVVKVNVNRGLGEAASNSKSLEASLNEMATITGQKALVTRAKKAIAGFKIREGMPIGCTVTLRGDRMYSFLERFINLALPRIRDFRGVNPKSFDGRGNYTVGVKEQLIFPEISFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROM0 (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 86/141 (60.99%), Postives = 109/141 (77.30%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y E I P L ++    NIHQVPK+ K+ VN G+G+AA N+K LEA++N++A ITGQ+ + TRA+ +IA FKIREG P+G  VTLRG+ MYSFL+R INL LPR RDF+GVNP SFDG GNY++GVKEQ +FPEI +D
Sbjct:    3 LKNRYKESIRPKLLKDLGLKNIHQVPKVVKVNVNRGLGEAASNSKALEASLNEMATITGQKALVTRAKKAIAGFKIREGMPIGCTVTLRGDRMYSFLERFINLALPRIRDFRGVNPKSFDGRGNYTVGVKEQLIFPEISFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACSS (50S ribosomal protein L5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 84/144 (58.33%), Postives = 111/144 (77.08%), Query Frame = 3
Query:  186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            T RLK  Y++++ P L E+F+YT+  QVPKIEKIV+N G+GDA  NAK L+ A+ +L LI GQ+P+ T+A+ SIA F++REG P+G  VTLRG  MY FLD+L+N+ LPR RDF GV+  SFDG GNY++GV+EQ +FPEI YD
Sbjct:    2 TNRLKEKYVKEMTPALIEKFNYTSSMQVPKIEKIVLNMGVGDAVSNAKNLDKAVEELGLIAGQKPLITKAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVNVSLPRVRDFHGVSAKSFDGRGNYTLGVREQLIFPEIDYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_EUBR3 (50S ribosomal protein L5 OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 84/142 (59.15%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+  Y  +I   + ++F Y N  ++PK++KIVVN G+G+A +NAK LEAA+ D+  ITGQ+ V T+A+N+IA FKIREG P+G  VTLRG  MY F DRLINL LPR RDF+GVNPN+FDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLREQYENEIKDAMIKKFGYKNAMEIPKLDKIVVNMGVGEAKENAKVLEAAVKDMEAITGQKAVTTKAKNAIANFKIREGMPIGCKVTLRGEKMYEFADRLINLALPRVRDFRGVNPNAFDGRGNYALGIKEQIIFPEIEYD 144          
The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_SYNE73.123e-4559.5750S ribosomal protein L5 OS=Synechococcus elongatu... [more]
RL5_PROM33.123e-4561.7050S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_GEOSW3.123e-4559.1550S ribosomal protein L5 OS=Geobacillus sp. (strai... [more]
RL5_BREBN3.123e-4557.7550S ribosomal protein L5 OS=Brevibacillus brevis (... [more]
RK5_CHAVU3.123e-4557.7550S ribosomal protein L5, chloroplastic OS=Chara v... [more]
RL5_PROMS4.079e-4560.9950S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_PROM94.079e-4560.9950S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_PROM04.079e-4560.9950S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_LACSS4.079e-4558.3350S ribosomal protein L5 OS=Lactobacillus sakei su... [more]
RL5_EUBR34.079e-4559.1550S ribosomal protein L5 OS=Eubacterium rectale (s... [more]

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Properties
Property NameValue
Genbank descriptionC05138G02SK FerrChloL1 Citrus clementina cDNA clone C05138G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bp
AAACTCATGGCGTTTCCTTCGCTGTTACCTCCTCTGCGTCGTCGTTTCAC
GGCCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCC
AAACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAG
GCATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAA
ACCACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTA
TACTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTG
GTATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAAT
GACTTGGCACTCATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAA
TTCCATTGCCACCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTG
TCACACTCAGAGGAAATATGATGTACTCATTTCTAGACCGTCTTATTAAT
TTGGGGCTTCCTAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTT
TGATGGACATGGGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCC
CGGAGATCAGGTATGATGC
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