CX296315

Overview
NameCX296315
Unique NameCX296315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:48..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BACHD (50S ribosomal protein L5 OS=Bacillus halodurans GN=rplE PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.079e-45
Identity = 84/142 (59.15%), Postives = 112/142 (78.87%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y ++IVP L E+F+Y+++  VPK+EKIVVN G+GDA QNAK L+ A+ +L  ITGQ+P+ T+A+ SIA FK+REG P+G  VTLRG  MY FLD+LI++ LPR RDF+G++  +FDG GNY++GVKEQ +FPEI YD
Sbjct:    3 RLKEKYQKEIVPSLTEKFNYSSVMAVPKLEKIVVNMGVGDAVQNAKALDKAVEELTEITGQKPIITKAKKSIAGFKLREGMPIGAKVTLRGERMYEFLDKLISVSLPRVRDFRGISKKAFDGRGNYTLGVKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYNS3 (50S ribosomal protein L5 OS=Synechococcus sp. (strain CC9311) GN=rplE PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.328e-45
Identity = 86/141 (60.99%), Postives = 112/141 (79.43%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LK  Y E I P L ++ S +NIH+VPK+ K+ VN G+G+AA NAK LEA++N+LA ITGQ+ V TRA+ +IA FKIR+G P+G AVTLRG+ MY+FL+R INL LPR RDF+GV+P SFDG GNY++GV+EQ +FPEI +D
Sbjct:    3 LKQRYRETIQPKLLKDLSLSNIHEVPKVLKVTVNRGLGEAATNAKSLEASVNELAQITGQKVVITRAKKAIAAFKIRQGMPIGCAVTLRGDRMYAFLERFINLALPRIRDFRGVSPKSFDGRGNYTVGVREQIIFPEISFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LEPIN (50S ribosomal protein L5 OS=Leptospira interrogans GN=rplE PE=3 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 5.328e-45
Identity = 86/142 (60.56%), Postives = 113/142 (79.58%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+T Y ++IVP L ++F +++I QVP++EKIV+N G+G+A  N K LEAA+ +LALITGQRPVKT+A+ SIA FKIREG  LG  VTLRG+ MY FLDRL+N+ LPR RDF+GV+   FDG GNY++ +KEQ +FPEI+ D
Sbjct:    4 RLRTKYKKEIVPELNKKFKFSSIMQVPRLEKIVLNVGMGEAHTNPKALEAAVEELALITGQRPVKTKAKKSIAGFKIREGMSLGCMVTLRGDYMYEFLDRLVNVALPRVRDFKGVSEKGFDGRGNYNMSIKEQIIFPEIKVD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LEPIC (50S ribosomal protein L5 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rplE PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.328e-45
Identity = 86/142 (60.56%), Postives = 113/142 (79.58%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL+T Y ++IVP L ++F +++I QVP++EKIV+N G+G+A  N K LEAA+ +LALITGQRPVKT+A+ SIA FKIREG  LG  VTLRG+ MY FLDRL+N+ LPR RDF+GV+   FDG GNY++ +KEQ +FPEI+ D
Sbjct:    4 RLRTKYKKEIVPELNKKFKFSSIMQVPRLEKIVLNVGMGEAHTNPKALEAAVEELALITGQRPVKTKAKKSIAGFKIREGMSLGCMVTLRGDYMYEFLDRLVNVALPRVRDFKGVSEKGFDGRGNYNMSIKEQIIFPEIKVD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_EXIS2 (50S ribosomal protein L5 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=rplE PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.328e-45
Identity = 82/142 (57.75%), Postives = 111/142 (78.17%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y ++IV ++ E+F+YT++ Q PK++KIV+N G+GDA  N K L+ A+ +L L+TGQ+P+ T+A+ SIA FK+REG P+G  VTLRG  MY FLD+LIN+ LPR RDF+GV+  SFDG GNY++GVKEQ +FPEI YD
Sbjct:    3 RLKAKYQDEIVKVMMEKFNYTSVMQAPKVDKIVINMGVGDAVTNTKALDMAVEELQLLTGQKPLITKAKKSIAGFKLREGMPIGAKVTLRGERMYEFLDKLINVSLPRVRDFRGVSKKSFDGRGNYTLGVKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BARHE (50S ribosomal protein L5 OS=Bartonella henselae GN=rplE PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.328e-45
Identity = 84/149 (56.38%), Postives = 113/149 (75.84%), Query Frame = 3
Query:  171 SEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            +E ++T R+KT Y E +   L+E+F+Y N+ Q+P+++KIV+N GIG+A  ++K    A  DL LITGQ+ V TRARNSIATFK+REG PLG  VTLR + M+ FLDRL+ + LPR RDF+G+NP SFDG GN+++G+KE  VFPEI YD
Sbjct:    2 AEEKQTPRMKTHYFEVVRKTLQEKFNYKNVMQIPRVDKIVINMGIGEATADSKKPSIAAEDLGLITGQKAVVTRARNSIATFKVREGMPLGAKVTLRKDRMFEFLDRLVTIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYD 150          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_MOOTA (50S ribosomal protein L5 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplE PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 82/142 (57.75%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL++I   L+ +F Y NI ++PK+EKIV+N G+ +A QN K ++ A+ DL  ITGQ+PV T+A+ SIA FK+R+G  +G  VTLRG+ MY FLDRLIN+ LPR RDF GV+PNSFDG GNY++G++EQ +FPEI YD
Sbjct:    3 RLKEKYLQEIRKALQAKFGYKNIMEIPKLEKIVINMGVSEATQNPKAIDNAVQDLMTITGQKPVVTKAKKSIAAFKLRQGTSIGCKVTLRGDRMYEFLDRLINVALPRVRDFHGVSPNSFDGRGNYTLGIREQLIFPEIEYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BACSU (50S ribosomal protein L5 OS=Bacillus subtilis GN=rplE PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 83/142 (58.45%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y ++I P L  +F+Y ++ QVPKIEKIV+N G+GDA QNAK +++A+ +L  I GQ+PV TRA+ SIA F++REG P+G  VTLRG  MY FLD+LI++ LPR RDF+GV+  SFDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BACP2 (50S ribosomal protein L5 OS=Bacillus pumilus (strain SAFR-032) GN=rplE PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 82/142 (57.75%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y+++I P L  +F Y ++ QVPKIEKIV+N G+GDA QNAK ++ A+ +L  I GQ+PV TRA+ SIA F++REG P+G  VTLRG  MY FLD+LI++ LPR RDF+G++  SFDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLKEKYVKEITPALVSKFEYKSVMQVPKIEKIVINMGVGDAVQNAKAIDTAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGISKKSFDGRGNYTLGIKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BACLD (50S ribosomal protein L5 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplE PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 82/142 (57.75%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y ++I P L ++F Y ++ QVPKIEKIV+N G+GDA QNAK +++A+ +L  I GQ+PV TRA+ SIA F++REG P+G  VTLRG  MY FLD+LI++ LPR RDF+G++  SFDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLKEKYNKEITPALMKKFEYKSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGISKKSFDGRGNYTLGIKEQLIFPEIDYD 144          
The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_BACHD4.079e-4559.1550S ribosomal protein L5 OS=Bacillus halodurans GN... [more]
RL5_SYNS35.328e-4560.9950S ribosomal protein L5 OS=Synechococcus sp. (str... [more]
RL5_LEPIN5.328e-4560.5650S ribosomal protein L5 OS=Leptospira interrogans... [more]
RL5_LEPIC5.328e-4560.5650S ribosomal protein L5 OS=Leptospira interrogans... [more]
RL5_EXIS25.328e-4557.7550S ribosomal protein L5 OS=Exiguobacterium sibiri... [more]
RL5_BARHE5.328e-4556.3850S ribosomal protein L5 OS=Bartonella henselae GN... [more]
RL5_MOOTA6.958e-4557.7550S ribosomal protein L5 OS=Moorella thermoacetica... [more]
RL5_BACSU6.958e-4558.4550S ribosomal protein L5 OS=Bacillus subtilis GN=r... [more]
RL5_BACP26.958e-4557.7550S ribosomal protein L5 OS=Bacillus pumilus (stra... [more]
RL5_BACLD6.958e-4557.7550S ribosomal protein L5 OS=Bacillus licheniformis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G02SK FerrChloL1 Citrus clementina cDNA clone C05138G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bp
AAACTCATGGCGTTTCCTTCGCTGTTACCTCCTCTGCGTCGTCGTTTCAC
GGCCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCC
AAACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAG
GCATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAA
ACCACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTA
TACTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTG
GTATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAAT
GACTTGGCACTCATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAA
TTCCATTGCCACCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTG
TCACACTCAGAGGAAATATGATGTACTCATTTCTAGACCGTCTTATTAAT
TTGGGGCTTCCTAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTT
TGATGGACATGGGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCC
CGGAGATCAGGTATGATGC
back to top