CX296315

Overview
NameCX296315
Unique NameCX296315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:48..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_OEDCA (50S ribosomal protein L5, chloroplastic OS=Oedogonium cardiacum GN=rpl5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 85/142 (59.86%), Postives = 112/142 (78.87%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y+E IVP L E+F Y NIHQVP+I+KIV+N GIG+A+Q+ K LE++  +L LI GQ+ V TR++ +IATFK+R+  P+G+ VTLRG  MY FLDR+INL LPR RDFQG+NP SFD  G+YS+G++EQ +FPE+ YD
Sbjct:    4 RLKQLYMETIVPKLMEKFKYKNIHQVPRIKKIVINRGIGEASQSNKILESSFKELNLIAGQKGVITRSKKAIATFKLRKNVPVGVTVTLRGERMYGFLDRMINLALPRIRDFQGINPKSFDKFGSYSLGLEEQLMFPEMEYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_LEPTE (50S ribosomal protein L5, chloroplastic OS=Leptosira terrestris GN=rpl5 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45
Identity = 87/145 (60.00%), Postives = 114/145 (78.62%), Query Frame = 3
Query:  183 KTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            K  RLK  YL+ IVP L E+F+Y N  QVP++EKIV+N GIGDA+QNAK LE+++ +L +I GQ+ + TR++ +IA FK+R+  P+G+ VTLRG  MYSFLDRLINL LPR RDF+G++  SFDG GNYS+GV+EQ +FPEI YD
Sbjct:    2 KINRLKKYYLQTIVPKLIEQFAYKNQMQVPRLEKIVINRGIGDASQNAKVLESSLKELTIIAGQKGIITRSKKAIAGFKLRQNLPVGVCVTLRGERMYSFLDRLINLALPRIRDFRGMSVESFDGQGNYSLGVEEQLMFPEIVYD 146          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROMT (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain NATL2A) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.088e-45
Identity = 83/141 (58.87%), Postives = 112/141 (79.43%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LKT Y E I P L ++    N+HQVPK++K+ +N G+G+AA N+K LEA++ ++A I+GQ+ + TRA+ +IATFKIR+G P+G AVTLRG+ MY+FL+R INL LPR RDF+GV+P SFDG GNY+IGVKEQ +FPEI +D
Sbjct:    3 LKTRYRETIRPKLLKDLGLKNVHQVPKVQKVTLNRGLGEAATNSKALEASLKEMATISGQKALVTRAKKAIATFKIRQGMPIGCAVTLRGDRMYAFLERFINLALPRIRDFRGVSPKSFDGRGNYTIGVKEQLIFPEITFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_STIHE (50S ribosomal protein L5, chloroplastic OS=Stigeoclonium helveticum GN=rpl5 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.088e-45
Identity = 86/144 (59.72%), Postives = 115/144 (79.86%), Query Frame = 3
Query:  186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            T RL   Y E+I P L E+FSY N+HQVP++EKIV+N G+G+AAQ+ K LE+++ +L LI+GQ+ + TR++ +IA FKIRE  P+G+ VTLRG+ MYSFLDRLINL LPR RDFQG++  SFD +GNYS+G++EQ +FPEI YD
Sbjct:    2 TQRLSKLYFEQISPKLIEKFSYKNMHQVPRVEKIVINRGVGEAAQSNKVLESSLKELNLISGQKGIITRSKKAIAGFKIREKVPVGVFVTLRGDRMYSFLDRLINLALPRIRDFQGISAQSFDKYGNYSLGLEEQLMFPEIEYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACLS (50S ribosomal protein L5 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3
Query:  186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            T RLK  Y  ++VP L E+F+YT+I  VPK++KIV+N G+GDA  N+K L+ A+ +LALI+GQ+P+ T+A+ S+A F++REG P+G  VTLRG  M+ FLD+L+ + LPR RDF GV+  +FDG GNY++GVKEQ +FPEI YD
Sbjct:    2 TNRLKEKYTNEVVPALTEQFNYTSIMAVPKVDKIVINMGVGDAVNNSKNLDKAVAELALISGQKPLITKAKKSVAAFRLREGMPIGAKVTLRGERMFEFLDKLVTVSLPRVRDFHGVSNKAFDGRGNYTLGVKEQLIFPEINYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACLM (50S ribosomal protein L5 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3
Query:  186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            T RLK  Y  ++VP L E+F+YT+I  VPK++KIV+N G+GDA  N+K L+ A+ +LALI+GQ+P+ T+A+ S+A F++REG P+G  VTLRG  M+ FLD+L+ + LPR RDF GV+  +FDG GNY++GVKEQ +FPEI YD
Sbjct:    2 TNRLKEKYTNEVVPALTEQFNYTSIMAVPKVDKIVINMGVGDAVNNSKNLDKAVAELALISGQKPLITKAKKSVAAFRLREGMPIGAKVTLRGERMFEFLDKLVTVSLPRVRDFHGVSNKAFDGRGNYTLGVKEQLIFPEINYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACLA (50S ribosomal protein L5 OS=Lactococcus lactis subsp. lactis GN=rplE PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3
Query:  186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            T RLK  Y  ++VP L E+F+YT+I  VPK++KIV+N G+GDA  N+K L+ A+ +LALI+GQ+P+ T+A+ S+A F++REG P+G  VTLRG  M+ FLD+L+ + LPR RDF GV+  +FDG GNY++GVKEQ +FPEI YD
Sbjct:    2 TNRLKEKYTNEVVPALTEQFNYTSIMAVPKVDKIVINMGVGDAVNNSKNLDKAVAELALISGQKPLITKAKKSVAAFRLREGMPIGAKVTLRGERMFEFLDKLVTVSLPRVRDFHGVSNKAFDGRGNYTLGVKEQLIFPEINYD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACBA (50S ribosomal protein L5 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 82/144 (56.94%), Postives = 112/144 (77.78%), Query Frame = 3
Query:  186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            + RLK  Y+ +I P L E+FSY+++ Q PKIEKIV+N G+GDA  NAK L+ A+ +L LI+GQ+P+ T+A+ SIATF++REG  +G  VTLRG+ MY FLD+LIN+ LPR RDF GV+  +FDG GNY++GV+EQ +FPEI +D
Sbjct:    2 SARLKEKYVSEITPALVEKFSYSSVMQTPKIEKIVLNMGVGDAVSNAKNLDEAVEELGLISGQKPLVTKAKKSIATFRLREGMSIGAKVTLRGDRMYEFLDKLINVSLPRVRDFHGVSSRAFDGRGNYTLGVREQLIFPEINFD 145          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_GEOUR (50S ribosomal protein L5 OS=Geobacter uraniireducens (strain Rf4) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44
Identity = 81/142 (57.04%), Postives = 116/142 (81.69%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL   Y +++VP L ++F+Y N+ +VPK+EKIVVN G+G+A QN K L++A++++A+ITGQ+P+ T+A+ SIA FK+R+G P+G AVTLR + MY FLDRL+N+ LPR RDF+G++  +FDG+GNYS+GVKEQ +FPEI YD
Sbjct:    3 RLNELYNKEMVPQLMKDFNYRNVMEVPKLEKIVVNMGLGEAIQNVKILDSAVDEMAVITGQKPIITKAKKSIAGFKLRQGMPIGCAVTLRKDKMYEFLDRLVNVSLPRVRDFKGISGKAFDGNGNYSLGVKEQLIFPEINYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYMTH (50S ribosomal protein L5 OS=Symbiobacterium thermophilum GN=rplE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 81/141 (57.45%), Postives = 112/141 (79.43%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LKT Y +++ P L+++F+Y N+  +P++EKIV+N G+G+A QNAK L+AA+ D+A I GQRPV TRA+ SI++FKIR G P+G  VTLRG  M+ FL++LI + LPR RDF+GV+P SFDG GNY++G+KEQ +FPEI YD
Sbjct:    4 LKTKYQQEVAPALQKQFNYKNVMMIPRLEKIVINVGLGEAVQNAKALDAAVADIAAIAGQRPVITRAKKSISSFKIRTGMPIGCKVTLRGERMWDFLEKLIYVALPRVRDFRGVSPKSFDGRGNYALGLKEQLLFPEIDYD 144          
The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK5_OEDCA6.958e-4559.8650S ribosomal protein L5, chloroplastic OS=Oedogon... [more]
RK5_LEPTE6.958e-4560.0050S ribosomal protein L5, chloroplastic OS=Leptosi... [more]
RL5_PROMT9.088e-4558.8750S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RK5_STIHE9.088e-4559.7250S ribosomal protein L5, chloroplastic OS=Stigeoc... [more]
RL5_LACLS1.187e-4455.5650S ribosomal protein L5 OS=Lactococcus lactis sub... [more]
RL5_LACLM1.187e-4455.5650S ribosomal protein L5 OS=Lactococcus lactis sub... [more]
RL5_LACLA1.187e-4455.5650S ribosomal protein L5 OS=Lactococcus lactis sub... [more]
RL5_LACBA1.187e-4456.9450S ribosomal protein L5 OS=Lactobacillus brevis (... [more]
RL5_GEOUR1.187e-4457.0450S ribosomal protein L5 OS=Geobacter uraniireduce... [more]
RL5_SYMTH1.550e-4457.4550S ribosomal protein L5 OS=Symbiobacterium thermo... [more]

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Properties
Property NameValue
Genbank descriptionC05138G02SK FerrChloL1 Citrus clementina cDNA clone C05138G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bp
AAACTCATGGCGTTTCCTTCGCTGTTACCTCCTCTGCGTCGTCGTTTCAC
GGCCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCC
AAACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAG
GCATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAA
ACCACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTA
TACTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTG
GTATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAAT
GACTTGGCACTCATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAA
TTCCATTGCCACCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTG
TCACACTCAGAGGAAATATGATGTACTCATTTCTAGACCGTCTTATTAAT
TTGGGGCTTCCTAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTT
TGATGGACATGGGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCC
CGGAGATCAGGTATGATGC
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