CX296315
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_OEDCA (50S ribosomal protein L5, chloroplastic OS=Oedogonium cardiacum GN=rpl5 PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45 Identity = 85/142 (59.86%), Postives = 112/142 (78.87%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 RLK Y+E IVP L E+F Y NIHQVP+I+KIV+N GIG+A+Q+ K LE++ +L LI GQ+ V TR++ +IATFK+R+ P+G+ VTLRG MY FLDR+INL LPR RDFQG+NP SFD G+YS+G++EQ +FPE+ YD Sbjct: 4 RLKQLYMETIVPKLMEKFKYKNIHQVPRIKKIVINRGIGEASQSNKILESSFKELNLIAGQKGVITRSKKAIATFKLRKNVPVGVTVTLRGERMYGFLDRMINLALPRIRDFQGINPKSFDKFGSYSLGLEEQLMFPEMEYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_LEPTE (50S ribosomal protein L5, chloroplastic OS=Leptosira terrestris GN=rpl5 PE=3 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.958e-45 Identity = 87/145 (60.00%), Postives = 114/145 (78.62%), Query Frame = 3 Query: 183 KTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 K RLK YL+ IVP L E+F+Y N QVP++EKIV+N GIGDA+QNAK LE+++ +L +I GQ+ + TR++ +IA FK+R+ P+G+ VTLRG MYSFLDRLINL LPR RDF+G++ SFDG GNYS+GV+EQ +FPEI YD Sbjct: 2 KINRLKKYYLQTIVPKLIEQFAYKNQMQVPRLEKIVINRGIGDASQNAKVLESSLKELTIIAGQKGIITRSKKAIAGFKLRQNLPVGVCVTLRGERMYSFLDRLINLALPRIRDFRGMSVESFDGQGNYSLGVEEQLMFPEIVYD 146
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROMT (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain NATL2A) GN=rplE PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 9.088e-45 Identity = 83/141 (58.87%), Postives = 112/141 (79.43%), Query Frame = 3 Query: 195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 LKT Y E I P L ++ N+HQVPK++K+ +N G+G+AA N+K LEA++ ++A I+GQ+ + TRA+ +IATFKIR+G P+G AVTLRG+ MY+FL+R INL LPR RDF+GV+P SFDG GNY+IGVKEQ +FPEI +D Sbjct: 3 LKTRYRETIRPKLLKDLGLKNVHQVPKVQKVTLNRGLGEAATNSKALEASLKEMATISGQKALVTRAKKAIATFKIRQGMPIGCAVTLRGDRMYAFLERFINLALPRIRDFRGVSPKSFDGRGNYTIGVKEQLIFPEITFD 143
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RK5_STIHE (50S ribosomal protein L5, chloroplastic OS=Stigeoclonium helveticum GN=rpl5 PE=3 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 9.088e-45 Identity = 86/144 (59.72%), Postives = 115/144 (79.86%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RL Y E+I P L E+FSY N+HQVP++EKIV+N G+G+AAQ+ K LE+++ +L LI+GQ+ + TR++ +IA FKIRE P+G+ VTLRG+ MYSFLDRLINL LPR RDFQG++ SFD +GNYS+G++EQ +FPEI YD Sbjct: 2 TQRLSKLYFEQISPKLIEKFSYKNMHQVPRVEKIVINRGVGEAAQSNKVLESSLKELNLISGQKGIITRSKKAIAGFKIREKVPVGVFVTLRGDRMYSFLDRLINLALPRIRDFQGISAQSFDKYGNYSLGLEEQLMFPEIEYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACLS (50S ribosomal protein L5 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplE PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44 Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLK Y ++VP L E+F+YT+I VPK++KIV+N G+GDA N+K L+ A+ +LALI+GQ+P+ T+A+ S+A F++REG P+G VTLRG M+ FLD+L+ + LPR RDF GV+ +FDG GNY++GVKEQ +FPEI YD Sbjct: 2 TNRLKEKYTNEVVPALTEQFNYTSIMAVPKVDKIVINMGVGDAVNNSKNLDKAVAELALISGQKPLITKAKKSVAAFRLREGMPIGAKVTLRGERMFEFLDKLVTVSLPRVRDFHGVSNKAFDGRGNYTLGVKEQLIFPEINYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACLM (50S ribosomal protein L5 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplE PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44 Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLK Y ++VP L E+F+YT+I VPK++KIV+N G+GDA N+K L+ A+ +LALI+GQ+P+ T+A+ S+A F++REG P+G VTLRG M+ FLD+L+ + LPR RDF GV+ +FDG GNY++GVKEQ +FPEI YD Sbjct: 2 TNRLKEKYTNEVVPALTEQFNYTSIMAVPKVDKIVINMGVGDAVNNSKNLDKAVAELALISGQKPLITKAKKSVAAFRLREGMPIGAKVTLRGERMFEFLDKLVTVSLPRVRDFHGVSNKAFDGRGNYTLGVKEQLIFPEINYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACLA (50S ribosomal protein L5 OS=Lactococcus lactis subsp. lactis GN=rplE PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44 Identity = 80/144 (55.56%), Postives = 111/144 (77.08%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 T RLK Y ++VP L E+F+YT+I VPK++KIV+N G+GDA N+K L+ A+ +LALI+GQ+P+ T+A+ S+A F++REG P+G VTLRG M+ FLD+L+ + LPR RDF GV+ +FDG GNY++GVKEQ +FPEI YD Sbjct: 2 TNRLKEKYTNEVVPALTEQFNYTSIMAVPKVDKIVINMGVGDAVNNSKNLDKAVAELALISGQKPLITKAKKSVAAFRLREGMPIGAKVTLRGERMFEFLDKLVTVSLPRVRDFHGVSNKAFDGRGNYTLGVKEQLIFPEINYD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_LACBA (50S ribosomal protein L5 OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=rplE PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44 Identity = 82/144 (56.94%), Postives = 112/144 (77.78%), Query Frame = 3 Query: 186 TGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 + RLK Y+ +I P L E+FSY+++ Q PKIEKIV+N G+GDA NAK L+ A+ +L LI+GQ+P+ T+A+ SIATF++REG +G VTLRG+ MY FLD+LIN+ LPR RDF GV+ +FDG GNY++GV+EQ +FPEI +D Sbjct: 2 SARLKEKYVSEITPALVEKFSYSSVMQTPKIEKIVLNMGVGDAVSNAKNLDEAVEELGLISGQKPLVTKAKKSIATFRLREGMSIGAKVTLRGDRMYEFLDKLINVSLPRVRDFHGVSSRAFDGRGNYTLGVREQLIFPEINFD 145
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_GEOUR (50S ribosomal protein L5 OS=Geobacter uraniireducens (strain Rf4) GN=rplE PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.187e-44 Identity = 81/142 (57.04%), Postives = 116/142 (81.69%), Query Frame = 3 Query: 192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 RL Y +++VP L ++F+Y N+ +VPK+EKIVVN G+G+A QN K L++A++++A+ITGQ+P+ T+A+ SIA FK+R+G P+G AVTLR + MY FLDRL+N+ LPR RDF+G++ +FDG+GNYS+GVKEQ +FPEI YD Sbjct: 3 RLNELYNKEMVPQLMKDFNYRNVMEVPKLEKIVVNMGLGEAIQNVKILDSAVDEMAVITGQKPIITKAKKSIAGFKLRQGMPIGCAVTLRKDKMYEFLDRLVNVSLPRVRDFKGISGKAFDGNGNYSLGVKEQLIFPEINYD 144
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_SYMTH (50S ribosomal protein L5 OS=Symbiobacterium thermophilum GN=rplE PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44 Identity = 81/141 (57.45%), Postives = 112/141 (79.43%), Query Frame = 3 Query: 195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617 LKT Y +++ P L+++F+Y N+ +P++EKIV+N G+G+A QNAK L+AA+ D+A I GQRPV TRA+ SI++FKIR G P+G VTLRG M+ FL++LI + LPR RDF+GV+P SFDG GNY++G+KEQ +FPEI YD Sbjct: 4 LKTKYQQEVAPALQKQFNYKNVMMIPRLEKIVINVGLGEAVQNAKALDAAVADIAAIAGQRPVITRAKKSISSFKIRTGMPIGCKVTLRGERMWDFLEKLIYVALPRVRDFRGVSPKSFDGRGNYALGLKEQLLFPEIDYD 144 The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bpback to top |