CX296315

Overview
NameCX296315
Unique NameCX296315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig65 contig Ccv1_Contig65:48..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_MACCJ (50S ribosomal protein L5 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 82/142 (57.75%), Postives = 112/142 (78.87%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  +L +I P + ++F Y++I +VPKIEKIVVN GIGDA QN+K L++A+ +L  ITGQ+P+ T+A+ SIATF++REG P+G  VTLRG  MY F D+L+N+ LPR RDF+G++  +FDG GNY++GVKEQ +FPEI YD
Sbjct:    3 RLKEKFLNEITPEMMKKFEYSSIMEVPKIEKIVVNMGIGDAVQNSKVLDSAVEELQAITGQKPMVTKAKKSIATFRLREGMPIGAKVTLRGERMYEFFDKLVNVSLPRVRDFRGISNKAFDGRGNYTLGVKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_GLOVI (50S ribosomal protein L5 OS=Gloeobacter violaceus GN=rplE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 80/142 (56.34%), Postives = 113/142 (79.58%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            R+K  Y  ++VP L+E+F+YTN+ QVPKI KIV+N G+G+A+QNAK L+ ++ ++A I GQ+PV TRA+ +IA FK+R G P+G+ VTLR   MY FLDRL+++ LPR RDF+GV+P +FDG GNY++G++EQ +FPEI YD
Sbjct:    6 RMKDKYNREVVPRLQEQFNYTNLMQVPKISKIVINRGLGEASQNAKALDGSIAEVARIAGQKPVVTRAKKAIAGFKLRAGVPVGVTVTLRARRMYEFLDRLVSVALPRIRDFRGVSPKAFDGRGNYTLGLREQLIFPEIEYD 147          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_DICTD (50S ribosomal protein L5 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 84/141 (59.57%), Postives = 107/141 (75.89%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            L+  Y++++VP +  +F Y N   VPKIEKIVVN G+ +A QN   +EAA  DLA+ITGQ+P+  +AR SIA F +R+G P+G+ VTLRG  MY+FL +LINL LPR RDF GV+PNSFDG GNYS+G+KEQ VFPEI YD
Sbjct:    4 LREKYIKEVVPAMMRKFGYKNPMAVPKIEKIVVNIGVSEAVQNPGAIEAAARDLAIITGQKPIVRKARKSIANFHLRKGMPIGLKVTLRGERMYAFLYKLINLALPRVRDFSGVSPNSFDGRGNYSLGLKEQLVFPEIEYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_CLOPH (50S ribosomal protein L5 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 83/142 (58.45%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y  +I+  ++++F Y N  Q+PK++KIV+N G+G+A  NAK LEAA+ D+ +I GQ+ V T+AR S+A FK+REG  +G  VTLRG  MY F DRLINL LPR RDF+GVNPN+FDG GNY++GVKEQ +FPEI YD
Sbjct:    3 RLKEIYKNEIMAGMQKKFGYKNEMQIPKLDKIVINMGVGEAKDNAKALEAAVKDMEIIAGQKAVITKARKSVANFKLREGVAIGCKVTLRGEKMYEFADRLINLALPRVRDFRGVNPNAFDGRGNYALGVKEQLIFPEIEYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BARQU (50S ribosomal protein L5 OS=Bartonella quintana GN=rplE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 85/149 (57.05%), Postives = 112/149 (75.17%), Query Frame = 3
Query:  171 SEAEKTGRLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            +E ++T R+KT Y E I   L+E+F+Y N  Q+P+++K+VVN GIG+A  ++K    A  DL LITGQ+ V TRARNSIATFK+REG PLG  VTLR + M+ FLDRL+ + LPR RDF+G+NP SFDG GN+++G+KE  VFPEI YD
Sbjct:    2 AEEKQTPRMKTRYFEVIRKTLQEKFNYKNAMQIPRVDKVVVNMGIGEATIDSKRPSLAAEDLGLITGQKAVVTRARNSIATFKVREGMPLGAKVTLRKDRMFEFLDRLVTIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYD 150          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_BACA2 (50S ribosomal protein L5 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplE PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.550e-44
Identity = 82/142 (57.75%), Postives = 110/142 (77.46%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  Y ++I P L  +F+Y ++ QVPKIEKIV+N G+GDA QNAK +++A+ +L  I GQ+PV TRA+ SIA F++REG P+G  VTLRG  MY FLD+LI++ LPR RDF+G++  SFDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLKEKYNKEISPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGISKKSFDGRGNYTLGIKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_PROM1 (50S ribosomal protein L5 OS=Prochlorococcus marinus (strain NATL1A) GN=rplE PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 82/141 (58.16%), Postives = 112/141 (79.43%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            LKT Y E I P L ++    N+HQVPK++K+ +N G+G+AA N+K LEA++ ++A I+GQ+ + TRA+ +IATFKIR+G P+G +VTLRG+ MY+FL+R INL LPR RDF+GV+P SFDG GNY+IGVKEQ +FPEI +D
Sbjct:    3 LKTRYRETIRPKLLKDLGLKNVHQVPKVQKVTLNRGLGEAATNSKALEASLKEMATISGQKALVTRAKKAIATFKIRQGMPIGCSVTLRGDRMYAFLERFINLALPRIRDFRGVSPKSFDGRGNYTIGVKEQLIFPEITFD 143          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_GEOSF (50S ribosomal protein L5 OS=Geobacter sp. (strain FRC-32) GN=rplE PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 84/142 (59.15%), Postives = 112/142 (78.87%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RL   Y +++VP L ++F+Y NI QVPK+EKIV+N G+G+A QN K L++A++++ALI GQ+PV T+A+ SIA FK+R+G P+G AVTLR   MY FLDRLIN+ LPR RDF+G++   FDG GNYS+GVKEQ +FPEI YD
Sbjct:    3 RLNELYNKELVPQLMKDFNYRNIMQVPKLEKIVINMGLGEAIQNVKILDSAVSEMALIAGQKPVITKAKKSIAGFKLRQGMPIGCAVTLRREKMYEFLDRLINVSLPRVRDFKGISGKGFDGKGNYSLGVKEQLIFPEIDYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_DESRM (50S ribosomal protein L5 OS=Desulfotomaculum reducens (strain MI-1) GN=rplE PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 80/142 (56.34%), Postives = 108/142 (76.06%), Query Frame = 3
Query:  192 RLKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            RLK  YL ++ P L ++F Y NI QVPK+EK+++N G+G+A QN+K ++AA+ DL  ITGQRP+ T+A+ SIA FK+R G  +G  VTLRG  MY F+DRL N+ LPR RDF+G++  SFDG GNY++G+KEQ +FPEI YD
Sbjct:    3 RLKDKYLNEVQPNLMQKFGYKNIMQVPKLEKVIINIGLGEAVQNSKAVDAAVGDLMAITGQRPITTKAKKSIAAFKLRAGMTIGTKVTLRGERMYEFVDRLFNVALPRVRDFRGISDKSFDGRGNYTMGLKEQLIFPEIEYD 144          
BLAST of CX296315 vs. ExPASy Swiss-Prot
Match: RL5_DESAA (50S ribosomal protein L5 OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rplE PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.025e-44
Identity = 77/141 (54.61%), Postives = 112/141 (79.43%), Query Frame = 3
Query:  195 LKTTYLEKIVPLLREEFSYTNIHQVPKIEKIVVNCGIGDAAQNAKGLEAAMNDLALITGQRPVKTRARNSIATFKIREGEPLGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNPNSFDGHGNYSIGVKEQSVFPEIRYD 617
            L+T YLE + P L+EEF Y+N  Q+P++ K+V+N G+G+A QN K LE A+++L LI+GQ+PV T+A+ SIA FK+REG P+G+  TLR + MY FL++L+N+ LPR RDF+G++P +FDG GNY++G++EQ +FPEI YD
Sbjct:    4 LRTEYLENVAPKLQEEFGYSNAMQIPRLSKVVLNMGLGEAIQNNKILEGAVDELTLISGQKPVVTKAKKSIAAFKLREGMPIGVTATLRRDRMYDFLNKLVNVTLPRVRDFRGISPKAFDGRGNYTLGIREQIIFPEINYD 144          
The following BLAST results are available for this feature:
BLAST of CX296315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL5_MACCJ1.550e-4457.7550S ribosomal protein L5 OS=Macrococcus caseolytic... [more]
RL5_GLOVI1.550e-4456.3450S ribosomal protein L5 OS=Gloeobacter violaceus ... [more]
RL5_DICTD1.550e-4459.5750S ribosomal protein L5 OS=Dictyoglomus turgidum ... [more]
RL5_CLOPH1.550e-4458.4550S ribosomal protein L5 OS=Clostridium phytoferme... [more]
RL5_BARQU1.550e-4457.0550S ribosomal protein L5 OS=Bartonella quintana GN... [more]
RL5_BACA21.550e-4457.7550S ribosomal protein L5 OS=Bacillus amyloliquefac... [more]
RL5_PROM12.025e-4458.1650S ribosomal protein L5 OS=Prochlorococcus marinu... [more]
RL5_GEOSF2.025e-4459.1550S ribosomal protein L5 OS=Geobacter sp. (strain ... [more]
RL5_DESRM2.025e-4456.3450S ribosomal protein L5 OS=Desulfotomaculum reduc... [more]
RL5_DESAA2.025e-4454.6150S ribosomal protein L5 OS=Desulfatibacillum alke... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G02SK FerrChloL1 Citrus clementina cDNA clone C05138G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296315 ID=CX296315; Name=CX296315; organism=Citrus clementina; type=EST; length=619bp
AAACTCATGGCGTTTCCTTCGCTGTTACCTCCTCTGCGTCGTCGTTTCAC
GGCCGATTCCCCGCTCTCTCATCTTCATCATATGTACGGCCCACATATCC
AAACCCTATAAATGTGAATGGGGTGGTCTCGGTGAAGGCGGCGGCTGGAG
GCATTGTGTTGGTGGAGAAATCCGAAGCAGAGAAGACCGGACGGCTCAAA
ACCACGTATCTCGAAAAGATTGTTCCTTTGCTCAGAGAAGAGTTTTCCTA
TACTAACATTCACCAGGTTCCGAAGATTGAGAAGATTGTTGTGAATTGTG
GTATTGGAGATGCTGCTCAGAATGCAAAAGGCCTGGAGGCGGCAATGAAT
GACTTGGCACTCATTACAGGTCAGAGACCTGTAAAGACGCGAGCAAGGAA
TTCCATTGCCACCTTCAAGATCAGGGAAGGCGAACCACTTGGAATTGCTG
TCACACTCAGAGGAAATATGATGTACTCATTTCTAGACCGTCTTATTAAT
TTGGGGCTTCCTAGAACAAGGGATTTCCAAGGTGTGAATCCCAATAGCTT
TGATGGACATGGGAATTACAGCATTGGTGTTAAAGAACAGAGTGTTTTCC
CGGAGATCAGGTATGATGC
back to top