CX296317

Overview
NameCX296317
Unique NameCX296317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:53..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_TRIEI (Photosystem I reaction center subunit XI OS=Trichodesmium erythraeum (strain IMS101) GN=psaL PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.821e-26
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 624
            +QP  GDPF+G L TPI+ S     ++ NLP YR  +SP+LRG+EVG+AHG+ +VGP+ K GPLR++ +            V+I +ICL+ YG+ SF    P  A            D L+T++GW++         + G + A+FLL
Sbjct:   10 VQPYKGDPFVGHLSTPISDSDFTRAFIGNLPIYRPGLSPILRGLEVGMAHGYFIVGPWTKLGPLRDSAVANLGGLISTIALVLIATICLSAYGLVSFQGKSPEGA------------DPLKTSEGWSQFTGGFFIGAMGGAVVAFFLL 145          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_SYNY3 (Photosystem I reaction center subunit XI OS=Synechocystis sp. (strain PCC 6803) GN=psaL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 59/155 (38.06%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  175 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            QV+Q  NGDPF+G L TPI+ S     ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+   GPLR++E             +++ +  L+ YG+ +F              G +   D LQTADGW++         + G   AYFLL  L++
Sbjct:    6 QVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPWTLLGPLRDSEYQYIGGLIGALALILVATAALSSYGLVTFQ-------------GEQGSGDTLQTADGWSQFAAGFFVGGMGGAFVAYFLLENLSV 147          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_ODOSI (Photosystem I reaction center subunit XI OS=Odontella sinensis GN=psaL PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGW 558
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLRN++I            ++IL++ LTIYG+A+F +G+ +           +  + LQT   W
Sbjct:    5 IKPYNDDPFVGHLATPITSSSITRAILKNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRNSDIALFSGFLSTIGLILILTLGLTIYGVAAFGQGQTT-----------ENSNDLQTKKAW 119          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_CYAP4 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=psaL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 57/150 (38.00%), Postives = 84/150 (56.00%), Query Frame = 1
Query:  175 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 624
            ++I+P NGDPF G L TPI+ S     ++ NLPAYR  +SP+LRG+E+G+AHG+ L+GP+VK GPLR++++            ++I + CL  YGI SF + E +  P             L TA+GW++           G   A+ LL
Sbjct:    8 ELIKPYNGDPFTGHLSTPISDSDFTRTFIGNLPAYRKGLSPILRGLEIGMAHGYFLIGPWVKLGPLRDSDVANLGGLISGIALILIATACLAAYGIVSFQKEEAAANP-------------LNTAEGWSQFTAGFFVGATGGAFVAFTLL 144          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_CYAME (Photosystem I reaction center subunit XI OS=Cyanidioschyzon merolae GN=psaL PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 60/148 (40.54%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 624
            I+P N DPF+G L TPI SS L   YLS LP YR  VSP LRG+E+G+AHG+ L+GPFV+ GPLRNT+I            +VIL++ + +YG  SF                  +   L++ DGW +         + G  +AY LL
Sbjct:    5 IKPYNNDPFVGHLATPINSSSLTRAYLSQLPIYRRGVSPFLRGLEIGMAHGYFLIGPFVQLGPLRNTDIKYLAGLLSAIGLIVILTLGMLLYGAVSFT----------------NDSQDLESVDGWRQLASGFLLGAVGGAGFAYLLL 136          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PORYE (Photosystem I reaction center subunit XI OS=Porphyra yezoensis GN=psaL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 60/156 (38.46%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  175 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLP 642
            + I+P N DPF+G+L TP+++S        NLPAYR  +SPLLRG+E+G+AHG+ L+GPF K GPLR T++            ++IL+ CL++YG  SF               R    D LQT++GW +         + G  +AY LL   N+P
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGTSRNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVALLAGFLSSVGLIIILTTCLSMYGNVSFT--------------RADSKDPLQTSEGWGQFTAGFLVGAVGGSGFAYLLL--ANIP 142          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PHATR (Photosystem I reaction center subunit XI OS=Phaeodactylum tricornutum GN=psaL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.541e-25
Identity = 60/126 (47.62%), Postives = 79/126 (62.70%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGW 558
            I+P N DPF+G L TPITSS +    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPFVK GPLR++EI            +VIL++ LTIYG+A+F  G+  T        +    + LQT   W
Sbjct:    5 IKPYNDDPFVGHLATPITSSAVTRAILQNLPAYRFGLTPLLRGLEIGLAHGYFLMGPFVKLGPLRDSEIGLLAGFLSTVGLIVILTLGLTIYGVAAF--GQEKT--------QSSNENDLQTKKAW 120          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_ANASP (Photosystem I reaction center subunit XI OS=Anabaena sp. (strain PCC 7120) GN=psaL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 1
Query:  145 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 621
            K + S+    +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     N   P+    +T+      PD  Q+ +GW           I G + AYFL
Sbjct:    9 KNLPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLALSLYA----NSNPPTALASVTV---PNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_THAPS (Photosystem I reaction center subunit XI OS=Thalassiosira pseudonana GN=psaL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 57/126 (45.24%), Postives = 75/126 (59.52%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGW 558
            I+P N DPF+G L TPITSS L    L NLPAYR  ++PLLRG+E+GLAHG+ L+GPF + GPLRN++I            ++IL++ LTIYG A+F +              K    +LQT   W
Sbjct:    5 IKPYNDDPFVGHLATPITSSSLTRALLKNLPAYRFGLTPLLRGLEIGLAHGYFLIGPFAQLGPLRNSDIGLLAGFLSTIGLILILTLGLTIYGAAAFGQ-------------EKSNGSELQTKKSW 117          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_ANAVT (Photosystem I reaction center subunit XI OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaL PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.743e-24
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  145 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 621
            K + S+    +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     N   P     +T+      PD  Q+ +GW           I G + AYFL
Sbjct:    9 KNLPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLSLSLYA----NSNPPKALASVTV---PNPPDAFQSKEGWNNFASAFLIGGIGGAVVAYFL 160          
The following BLAST results are available for this feature:
BLAST of CX296317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_TRIEI6.821e-2638.51Photosystem I reaction center subunit XI OS=Tricho... [more]
PSAL_SYNY38.908e-2638.06Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_ODOSI8.908e-2646.03Photosystem I reaction center subunit XI OS=Odonte... [more]
PSAL_CYAP41.519e-2538.00Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_CYAME1.519e-2540.54Photosystem I reaction center subunit XI OS=Cyanid... [more]
PSAL_PORYE1.985e-2538.46Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_PHATR7.541e-2547.62Photosystem I reaction center subunit XI OS=Phaeod... [more]
PSAL_ANASP2.194e-2435.85Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_THAPS3.743e-2445.24Photosystem I reaction center subunit XI OS=Thalas... [more]
PSAL_ANAVT3.743e-2435.85Photosystem I reaction center subunit XI OS=Anabae... [more]

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Properties
Property NameValue
Genbank descriptionC05138G04SK FerrChloL1 Citrus clementina cDNA clone C05138G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296317 ID=CX296317; Name=CX296317; organism=Citrus clementina; type=EST; length=684bp
ATGGCTTCTGTTTCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCTTTAC
TTCACCAGTTTCCAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTC
CATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCT
ATCCAATCTGAAAAGCCAACTTACCAAGTTATTCAGCCAATCAATGGTGA
TCCATTCATTGGAAGCTTGGAGACTCCAATTACATCAAGTCCATTGATTG
CATGGTACCTCTCAAATCTACCAGCTTATCGGACGGCAGTCAGCCCACTA
CTGAGAGGAGTAGAGGTGGGGTTGGCCCATGGATTCCTCCTTGTGGGTCC
ATTTGTTAAGGCAGGGCCATTGAGAAACACAGAAATAGCAGGACCAGCAG
GGTCATTGGCAGCTGGTGGCCTTGTTGTGATCCTCAGCATTTGCTTGACA
ATCTATGGAATTGCTTCATTCAATGAAGGAGAGCCATCCACTGCTCCAGG
CTTAACATTGACCGGAAGGAAGAAGGAGCCTGATCAGTTGCAAACAGCTG
ATGGGTGGGCTAAGTTCACTGGAGGATTCTTCTTTGGTGGAATTTCTGGT
GTCATTTGGGCTTATTTCCTGCTTTATGTCCTTAACCTTCCTTACTTCGT
TAAATAGAAATATGTAACGTCTACTTTTTGGTTT
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