CX296317

Overview
NameCX296317
Unique NameCX296317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:53..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_MICAN (Photosystem I reaction center subunit XI OS=Microcystis aeruginosa (strain NIES-843) GN=psaL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 58/150 (38.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  175 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 624
            QV+ P N DPFIG L TPI++S     ++ NLPAYR  ++P+LRG+EVG+AHG+ L GP+V  GPLR++E             V++ + CL  YG+ SF              G+    D L++A+GW++         + G   AYFLL
Sbjct:    8 QVVTPYNDDPFIGHLATPISASGFTKAFIGNLPAYRPGLAPILRGLEVGMAHGYFLGGPWVVLGPLRDSEYANIGGLIPALAMVLLATGCLASYGLVSFQ-------------GKAASNDPLKSAEGWSQFAAGFFIGGMGGAFVAYFLL 144          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_ISOGA (Photosystem I reaction center subunit XI OS=Isochrysis galbana GN=psaL PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 56/158 (35.44%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  175 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYF 648
            + ++P N DPF+G+L TP+T+S     YL NLP YR  ++PLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF +                  + L+++ GW           + G   AY +L   N+ +F
Sbjct:    3 EFVKPFNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLTPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLIIILTLALTIYGLASFQDNGVG--------------ENLESSKGWRNFTSGFTIGALGGASVAYLVLN--NISFF 144          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_EMIHU (Photosystem I reaction center subunit XI OS=Emiliania huxleyi GN=psaL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.384e-24
Identity = 58/150 (38.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:  175 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 624
            + ++P N DPF+G+L TP+T+S     YL NLP YR  +SPLLRG+E+G+AHG+ L+GPF   GPLRN+              ++IL++ LTIYG+ASF   E                + L++A GW             G   AY LL
Sbjct:    3 EFVKPYNNDPFVGNLSTPVTTSTATKLYLGNLPIYRKGLSPLLRGLEIGMAHGYFLIGPFYILGPLRNSPNALLVGLFSAFGLILILTLGLTIYGLASFQGTEGG--------------ENLESAKGWRNFTSGFSIGAFGGASVAYVLL 138          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_MASLA (Photosystem I reaction center subunit XI OS=Mastigocladus laminosus GN=psaL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.338e-24
Identity = 64/174 (36.78%), Postives = 86/174 (49.43%), Query Frame = 1
Query:  118 SKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            SK SP        S+    +V+ P   DP IG LETPI SSPL+ W++ NLPAYR  ++   RG+EVG+AHG+ + GPF K GPLRNT              ++IL+  LT+Y     N   P     +        P+  Q+++GW           I G + AYFL   L L
Sbjct:    8 SKNSP--------SDPRNREVVFPAYRDPQIGDLETPINSSPLVKWFIGNLPAYRPGITTFRRGLEVGMAHGYWIFGPFAKLGPLRNTVNANLAGLLSALGLIIILTGALTLYA----NSKPPKPVKSV---ATPNPPEAFQSSEGWNNFASAFLIGGIGGAVVAYFLTSNLEL 166          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_NOSP7 (Photosystem I reaction center subunit XI OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=psaL PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 57/159 (35.85%), Postives = 84/159 (52.83%), Query Frame = 1
Query:  145 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFL 621
            K + S+    +V+ P   DP +G+LETP+ +SPL  W+++NLPAYR  +SP  RG+EVG+AHG+ + GPF K GPLR+T+             VV+L+  L++Y     N   P   P +T+       D   + + W           I G + AYFL
Sbjct:    9 KNLPSDPRNREVVFPAFRDPQLGNLETPVNASPLSKWFINNLPAYRPGLSPARRGLEVGMAHGYWIFGPFAKLGPLRDTDNANLAGLLAAIGLVVLLTGALSLYS----NSNPPKALPSVTVP--NPPVDAFNSKESWNNFASSFLIGGIGGAVVAYFL 161          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_SYNE7 (Photosystem I reaction center subunit XI OS=Synechococcus elongatus (strain PCC 7942) GN=psaL PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.682e-22
Identity = 60/150 (40.00%), Postives = 82/150 (54.67%), Query Frame = 1
Query:  196 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPY 645
            G P IG+L TPI SSP    +++ LP YR  +S   RG+E+G+AHGFLL GPF   GPLRNTE             VVIL++CL++YG    N G   +A   T+T     P +L T +GW++         + G   A+F  Y+ + PY
Sbjct:   10 GTPEIGNLATPINSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPFSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGLGG---AFFAFYLASTPY 151          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP6 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaL PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 6.606e-21
Identity = 58/150 (38.67%), Postives = 79/150 (52.67%), Query Frame = 1
Query:  196 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPY 645
            G P IG L TP  SSP    +++ LP YR  +S   RG+E+G+AHGFLL GP    GPLRNTE             VVIL++CL++YG    N G   +A   T+T     P +L T +GW++         + G   A+F  Y+ + PY
Sbjct:    9 GTPEIGDLATPTNSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPLSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYG----NAGSGPSAAESTVT-TPNPPQELFTKEGWSEFTSGFILGGLGG---AFFAFYLASTPY 150          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_CYAA5 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain ATCC 51142) GN=psaL PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.282e-20
Identity = 61/146 (41.78%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  196 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVL 633
            GDP IG+L TP+ SS L   ++ NLPAYR  +S   RG+EVG+AHG+ L GPF   GPLRNTE             + IL+I L++Y  AS   G+P      TLT     P+ L T+ GW +           GVI+AY L   L
Sbjct:    8 GDPQIGNLATPVNSSRLSLAFIRNLPAYRRGLSANRRGLEVGMAHGYFLYGPFAILGPLRNTEYASTGGLLSAVAMISILTIALSLY--ASVEVGKPIE----TLT-TPDVPEDLGTSVGWGEFANGFFIGGSGGVIFAYLLCQAL 146          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP2 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaL PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 51/152 (33.55%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  196 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNLPYFV 651
            GDP +G+L TPI +S     +++NLP YR  +S   RG+EVG+AHG+ L GPF   GPLRN +             + +L++ L++YG          + P  TLT     P+ L T +GW++           G + AY L   L + Y +
Sbjct:    8 GDPQVGNLATPINASAFSKAFINNLPGYRQGLSAQRRGLEVGMAHGYFLYGPFALLGPLRNADFAGVAGLLGTVGLISLLTLALSLYGSVGV------STPTATLT-TPNPPENLGTKEGWSEFAAGFLIGGCGGALVAYGLCIALPMMYTI 152          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PROM4 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9211) GN=psaL PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 51/153 (33.33%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            ++P++ DPF+G+LETP+ S      +++NLP YR+ +SP  RG+EVG A G+LL GPF   GPLRNT+             V IL+    +Y        +P+  P       +  P  L T  GW             G ++A+ L   L+L
Sbjct:   39 VKPVS-DPFVGNLETPVNSGYFTKAFINNLPFYRSGISPNFRGLEVGAAFGYLLYGPFAMTGPLRNTDFALTAGLLSTIGAVHILTALFVLYTAPG---KDPNVQPSDCTV--ENPPTDLFTRTGWTDFTSGFWLGGCGGAVFAWLLCGTLHL 185          
The following BLAST results are available for this feature:
BLAST of CX296317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_MICAN4.888e-2438.67Photosystem I reaction center subunit XI OS=Microc... [more]
PSAL_ISOGA6.384e-2435.44Photosystem I reaction center subunit XI OS=Isochr... [more]
PSAL_EMIHU6.384e-2438.67Photosystem I reaction center subunit XI OS=Emilia... [more]
PSAL_MASLA8.338e-2436.78Photosystem I reaction center subunit XI OS=Mastig... [more]
PSAL_NOSP75.404e-2335.85Photosystem I reaction center subunit XI OS=Nostoc... [more]
PSAL_SYNE72.682e-2240.00Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_SYNP66.606e-2138.67Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_CYAA54.282e-2041.78Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_SYNP21.799e-1833.55Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_PROM43.393e-1733.33Photosystem I reaction center subunit XI OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC05138G04SK FerrChloL1 Citrus clementina cDNA clone C05138G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296317 ID=CX296317; Name=CX296317; organism=Citrus clementina; type=EST; length=684bp
ATGGCTTCTGTTTCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCTTTAC
TTCACCAGTTTCCAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTC
CATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCT
ATCCAATCTGAAAAGCCAACTTACCAAGTTATTCAGCCAATCAATGGTGA
TCCATTCATTGGAAGCTTGGAGACTCCAATTACATCAAGTCCATTGATTG
CATGGTACCTCTCAAATCTACCAGCTTATCGGACGGCAGTCAGCCCACTA
CTGAGAGGAGTAGAGGTGGGGTTGGCCCATGGATTCCTCCTTGTGGGTCC
ATTTGTTAAGGCAGGGCCATTGAGAAACACAGAAATAGCAGGACCAGCAG
GGTCATTGGCAGCTGGTGGCCTTGTTGTGATCCTCAGCATTTGCTTGACA
ATCTATGGAATTGCTTCATTCAATGAAGGAGAGCCATCCACTGCTCCAGG
CTTAACATTGACCGGAAGGAAGAAGGAGCCTGATCAGTTGCAAACAGCTG
ATGGGTGGGCTAAGTTCACTGGAGGATTCTTCTTTGGTGGAATTTCTGGT
GTCATTTGGGCTTATTTCCTGCTTTATGTCCTTAACCTTCCTTACTTCGT
TAAATAGAAATATGTAACGTCTACTTTTTGGTTT
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