CX296317

Overview
NameCX296317
Unique NameCX296317
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:53..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PROMA (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus GN=psaL PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 52/155 (33.55%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTG--RKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            + P++ DP +G+L TP+ S      +L+NLP YR  +SP  RG+EVG A G+LL GP+   GPLRNT+             V IL+  L +Y         P  AP +  +       P  L T  GWA            G ++A+ L   L+L
Sbjct:   39 VTPVS-DPCVGNLSTPVNSGYFTKAFLNNLPFYRGGLSPNFRGLEVGAAFGYLLYGPYAMTGPLRNTDYALTAGLLGTIGAVHILTALLVLY-------NAPGKAPNIQPSDCTINNPPADLFTRSGWADFTSGFWLGGCGGAVFAWLLCGTLHL 185          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PROMS (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain AS9601) GN=psaL PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 50/149 (33.56%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  199 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLAAIGAVHILTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGSVFAWLLVGTLHL 185          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PROM2 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9215) GN=psaL PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 49/149 (32.89%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  199 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V I++  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFAVTAGLLSAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PROM0 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9301) GN=psaL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 49/149 (32.89%), Postives = 67/149 (44.97%), Query Frame = 1
Query:  199 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN+E             V IL+    +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSEFALTAGLLATIGAVHILTALFVLY-------NAPGKAPNVQPPDATVNNPPKDLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PROMP (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=psaL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 50/155 (32.26%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  181 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRK--KEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            ++P++ DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V IL+  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   39 VKPVS-DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFSMTGPLRNSDFALTAGLLATIGAVHILTGLLVLY-------NAPGKAPNVQPPDATVYNPPADLFTRTGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_PROM5 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9515) GN=psaL PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 48/149 (32.21%), Postives = 68/149 (45.64%), Query Frame = 1
Query:  199 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGR--KKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLLYVLNL 639
            DP +G+L TP+ S      +++NLP YR  +SP  RG+E G A G+LL GPF   GPLRN++             V I++  L +Y         P  AP +          P  L T  GWA            G ++A+ L+  L+L
Sbjct:   44 DPCVGNLATPVNSGYFTKAFINNLPFYREGISPNFRGLETGAAFGYLLYGPFTMTGPLRNSDFAITAGLLAAIGAVHIMTALLVLY-------NAPGKAPNVQPPDATVNNPPADLFTRAGWADFTSGFWLGGCGGAVFAWLLVGTLHL 185          
BLAST of CX296317 vs. ExPASy Swiss-Prot
Match: PSAL_GLOVI (Photosystem I reaction center subunit XI OS=Gloeobacter violaceus GN=psaL PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.511e-14
Identity = 48/142 (33.80%), Postives = 70/142 (49.30%), Query Frame = 1
Query:  199 DPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTLTGRKKEPDQLQTADGWAKXXXXXXXXXISGVIWAYFLL 624
            DP  G+L TP+ +S  I W++ NLP  R  +    RG+E+G+AHG+ L+GPF   GPLRNTE+            ++I +I L+  G AS  E  P      T   RK          GW++         + G I+A+ +L
Sbjct:   11 DPQEGTLLTPVNNSTAIRWFIDNLPINRVGMDEFTRGLEIGMAHGYWLIGPFALLGPLRNTELGLVAGLVSTIGLLLISTIGLS--GYASLVEDVP------TEFDRK----------GWSRLAGGFLVGGVGGAIFAFAIL 134          
The following BLAST results are available for this feature:
BLAST of CX296317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_PROMA8.357e-1633.55Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMS2.432e-1533.56Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM22.432e-1532.89Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM04.148e-1532.89Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROMP7.075e-1532.26Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_PROM57.075e-1532.21Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_GLOVI3.511e-1433.80Photosystem I reaction center subunit XI OS=Gloeob... [more]

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Properties
Property NameValue
Genbank descriptionC05138G04SK FerrChloL1 Citrus clementina cDNA clone C05138G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296317 ID=CX296317; Name=CX296317; organism=Citrus clementina; type=EST; length=684bp
ATGGCTTCTGTTTCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCTTTAC
TTCACCAGTTTCCAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGATCTC
CATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAAAGCT
ATCCAATCTGAAAAGCCAACTTACCAAGTTATTCAGCCAATCAATGGTGA
TCCATTCATTGGAAGCTTGGAGACTCCAATTACATCAAGTCCATTGATTG
CATGGTACCTCTCAAATCTACCAGCTTATCGGACGGCAGTCAGCCCACTA
CTGAGAGGAGTAGAGGTGGGGTTGGCCCATGGATTCCTCCTTGTGGGTCC
ATTTGTTAAGGCAGGGCCATTGAGAAACACAGAAATAGCAGGACCAGCAG
GGTCATTGGCAGCTGGTGGCCTTGTTGTGATCCTCAGCATTTGCTTGACA
ATCTATGGAATTGCTTCATTCAATGAAGGAGAGCCATCCACTGCTCCAGG
CTTAACATTGACCGGAAGGAAGAAGGAGCCTGATCAGTTGCAAACAGCTG
ATGGGTGGGCTAAGTTCACTGGAGGATTCTTCTTTGGTGGAATTTCTGGT
GTCATTTGGGCTTATTTCCTGCTTTATGTCCTTAACCTTCCTTACTTCGT
TAAATAGAAATATGTAACGTCTACTTTTTGGTTT
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