CX296318

Overview
NameCX296318
Unique NameCX296318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCR (Elongation factor Tu OS=Ehrlichia chaffeensis (strain Arkansas) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  E+   L K GY  + +  V  S  +   + E + +  W  K   L++AL+ I+ P R  DKP  + ++DV+ I G GTV   R+E GV++ G
Sbjct:   49 IDKAPEEKARGITISTAHVEYETENRHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWMNKCDVVD---DEEMLSLVEMEIRELLSKYGYPGDDIDVVRGSAVKA--LEEETGSGVWSEKIMELMNALEKISLPTREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIRVG 241          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_BRUSU (Elongation factor Tu OS=Brucella suis GN=tufA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 78/214 (36.45%), Postives = 114/214 (53.27%), Query Frame = 2
Query:    5 GSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            G FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV   RVE G++K G
Sbjct:   37 GEFKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_BRUSI (Elongation factor Tu OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 78/214 (36.45%), Postives = 114/214 (53.27%), Query Frame = 2
Query:    5 GSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            G FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV   RVE G++K G
Sbjct:   37 GEFKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSAIAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_BRUO2 (Elongation factor Tu OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 78/214 (36.45%), Postives = 114/214 (53.27%), Query Frame = 2
Query:    5 GSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            G FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV   RVE G++K G
Sbjct:   37 GEFKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_BRUME (Elongation factor Tu OS=Brucella melitensis GN=tufA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 78/214 (36.45%), Postives = 114/214 (53.27%), Query Frame = 2
Query:    5 GSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            G FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV   RVE G++K G
Sbjct:   37 GEFKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_BRUC2 (Elongation factor Tu OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 78/214 (36.45%), Postives = 114/214 (53.27%), Query Frame = 2
Query:    5 GSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            G FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV   RVE G++K G
Sbjct:   37 GEFKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_BRUA2 (Elongation factor Tu OS=Brucella abortus (strain 2308) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 78/214 (36.45%), Postives = 114/214 (53.27%), Query Frame = 2
Query:    5 GSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            G FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +   A   E+V+ EV   L K  +  +++P +  S      + + S  L       L+DA+D+ I  P+RP D+P  +P++DV+ I G GTV   RVE G++K G
Sbjct:   37 GEFKAYDQIDAAPEERARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKCD----QVDDAELLELVELEVRELLSKYEFPGDEIPIIKGSALAA--LEDSSKELGEDAIRNLMDAVDSYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_ARCB4 (Elongation factor Tu OS=Arcobacter butzleri (strain RM4018) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.954e-27
Identity = 76/220 (34.55%), Postives = 113/220 (51.36%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG---MVVTFGPSGLT 673
            +D    ERERGITI  +  ++ET K +   +D PGH D++KNMITG +Q D A+L+I ST G          QTREH LL+  +GV  ++   NK D   P+  +   + +  E+   L    +  +  P +  S F+     +      W  K   L+DA+D  I  P+R  D+   +P++DV+ I G GTV   R+E G +K G    +V FG +  T
Sbjct:   50 IDNAPEERERGITIATSHIEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGAILVIASTDGPM-------AQTREHILLSKQVGVPYIVVFMNKEDQLDPQDKEEMLELVEMEIRELLSTYDFPGDDTPIIAGSAFQALEEAKAGAVGPWGEKIVALMDAVDEYIPTPERDIDQAFLMPVEDVFSISGRGTVVTGRIEKGTIKVGEEIEIVGFGDTRKT 262          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_STRSY (Elongation factor Tu OS=Streptococcus suis (strain 05ZYH33) GN=tuf PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 75/206 (36.41%), Postives = 113/206 (54.85%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E            L++ +D  I EP+R +DKPL LP++DV+ I G GTV   R++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIV-------MELMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_STRS2 (Elongation factor Tu OS=Streptococcus suis (strain 98HAH33) GN=tuf PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 75/206 (36.41%), Postives = 113/206 (54.85%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E            L++ +D  I EP+R +DKPL LP++DV+ I G GTV   R++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIV-------MELMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
The following BLAST results are available for this feature:
BLAST of CX296318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_EHRCR5.954e-2736.10Elongation factor Tu OS=Ehrlichia chaffeensis (str... [more]
EFTU_BRUSU5.954e-2736.45Elongation factor Tu OS=Brucella suis GN=tufA PE=3... [more]
EFTU_BRUSI5.954e-2736.45Elongation factor Tu OS=Brucella suis (strain ATCC... [more]
EFTU_BRUO25.954e-2736.45Elongation factor Tu OS=Brucella ovis (strain ATCC... [more]
EFTU_BRUME5.954e-2736.45Elongation factor Tu OS=Brucella melitensis GN=tuf... [more]
EFTU_BRUC25.954e-2736.45Elongation factor Tu OS=Brucella canis (strain ATC... [more]
EFTU_BRUA25.954e-2736.45Elongation factor Tu OS=Brucella abortus (strain 2... [more]
EFTU_ARCB45.954e-2734.55Elongation factor Tu OS=Arcobacter butzleri (strai... [more]
EFTU_STRSY7.777e-2736.41Elongation factor Tu OS=Streptococcus suis (strain... [more]
EFTU_STRS27.777e-2736.41Elongation factor Tu OS=Streptococcus suis (strain... [more]

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Properties
Property NameValue
Genbank descriptionC05138G05SK FerrChloL1 Citrus clementina cDNA clone C05138G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296318 ID=CX296318; Name=CX296318; organism=Citrus clementina; type=EST; length=674bp
ACGAGGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTG
ACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCC
CTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGT
CCCAGTGAGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGA
CATTTGGCCCCTCTGGATTGACAC
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