CX296318

Overview
NameCX296318
Unique NameCX296318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_MICLU (Elongation factor Tu OS=Micrococcus luteus GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 75/207 (36.23%), Postives = 109/207 (52.66%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ ++ P +    +   EGD          W K    L+DA+D  I +P R  DKP  +P++DV+ I G GTV   R E G LK
Sbjct:   52 IDSAPEERQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPALLVALNKSDMVE---DEELLERVEMEVRQLLSSRSFDVDEAPVIRTSALKALEGDP--------QWVKSVEDLMDAVDEYIPDPVRDKDKPFLMPIEDVFTITGRGTVVTGRAERGTLK 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCJ (Elongation factor Tu OS=Ehrlichia canis (strain Jake) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDW-YKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D       +     +  E+   L K GY  + +  V  S  +   + E + +  W  K   L++AL+ I+ P R  DKP  + ++DV+ I G GTV   R+E GV++ G
Sbjct:   49 IDKAPEEKARGITISTAHVEYETENRHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWMNKCDVVD---DEEMLSLVEMEIRELLSKYGYPGDDIDVVRGSAVKA--LEEETGSGVWSEKIMELMNALEKISLPVREKDKPFLMSIEDVFSIPGRGTVVTGRIERGVIRVG 241          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_DESAH (Elongation factor Tu OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 76/207 (36.71%), Postives = 109/207 (52.66%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP--TLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   ERERGITI  A  ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L K  +  +  P V  S  +    +E  T+ D    P   LLD LD  + EP R +DK   +P++DV+ I G GTV   R++ G++K G
Sbjct:   50 IDKAPEERERGITISTAHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSADDGPMP-------QTREHILLARQVGVPSIVVFLNKCDMVD---DEELIELVEMELQELLTKYEFPGDDTPIVRGSALKA---LEADTSDDPAAEPILKLLDVLDEYVKEPVRDTDKDFLMPIEDVFSISGRGTVVTGRIDRGIIKTG 243          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CORK4 (Elongation factor Tu OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 82/205 (40.00%), Postives = 114/205 (55.61%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +DK   E+ERGITI+IA  ++ T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  ++ E  P V IS     EGD   E+S  LD      L+DA D +I +P R +DKP  +P++D++ I G GTV   RVE G L
Sbjct:   52 IDKAPEEKERGITINIAHVEYSTPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEDLIELVEMEVRELLAEQDFD-EDAPIVHISALKALEGDEKWEQSI-LD------LMDACDESIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGKL 238          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 74/204 (36.27%), Postives = 113/204 (55.39%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +DK   E+ERGITI  +  ++ET   +   ID PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+  +    E+ + +SSY    G+  + +P +     +G  +   +   +W  K   L++A+DN I  P R  DKP  +P++DV+ I G GTV   R+E GV+K
Sbjct:   50 IDKAPEEKERGITISTSHVEYETPSRHYAHIDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVNVPSIVVFMNKVDIADPELIELVEMELRELLSSY----GFPGDDIPII-----QGSALGALNGEAEWVGKIEELMEAVDNYIPTPVRDVDKPFLMPVEDVFSISGRGTVGTGRIERGVIK 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_ANAPZ (Elongation factor Tu OS=Anaplasma phagocytophilum (strain HZ) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 74/205 (36.10%), Postives = 110/205 (53.66%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D    +   +  D  ++E+   L + GY+ + +  V  S  +    +E   +  W  K   L+ AL+ I  P R  DKP  + ++DV+ I G GTV   R+E GV++ G
Sbjct:   48 IDKAPEEKARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWINKCDVVEDEEMLSLVDMEIREL---LSQYGYDGDSIDAVRGSAVKA---LEEDADGPWSDKIMELVGALEKIELPMREKDKPFLMSVEDVFSIPGRGTVVTGRIERGVVRVG 239          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU1_STRAW (Elongation factor Tu 1 OS=Streptomyces avermitilis GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.777e-27
Identity = 75/206 (36.41%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +      +  V+E+ S  +  G +   V    +   EGD         +W  G ++LD +    +NI +P+R  DKP  +P++DV+ I G GTV   R+E GVLK
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTETRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDEEILELVELEVRELLSEYEFPGDDLPVVKVSALKALEGDK--------EW--GQSVLDLMKAVDENIPQPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLK 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_SYNS9 (Elongation factor Tu OS=Synechococcus sp. (strain CC9902) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 72/206 (34.95%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG-DNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P + +SG +  +   E    +D      L+DA+D +I EP+R  DKP  + ++DV+ I G GTV   R+E G++K G
Sbjct:   50 IDGAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEIIELVEMEIRELLSSYDFPGDDIPVIQVSGLKAIEGEAEWEAKID-----ELMDAVDASIPEPEREVDKPFLMAIEDVFSITGRGTVATGRIERGIVKVG 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_SULMW (Elongation factor Tu OS=Sulcia muelleri (strain GWSS) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 74/207 (35.75%), Postives = 112/207 (54.11%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    E+ERGITI+ +  +++T   +   +D PGH D++KNM+TG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK+D    K       E+V+ E+   L K  Y+ E +P +     +G  +   +    W K   TL+  +DN I EP R  DKP  +P++DV+ I G GTV   R+ETG +  G
Sbjct:   50 IDNAPEEKERGITINTSHVEYQTEIRHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVPNLVVFMNKVDQVDDK----EILELVEIEIRELLSKYEYDGENIPII-----QGSALGALNGEKKWEKQIETLMKTVDNYIKEPIRNIDKPFLMPIEDVFTITGRGTVATGRIETGTINTG 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CORGL (Elongation factor Tu OS=Corynebacterium glutamicum GN=tuf PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 79/208 (37.98%), Postives = 113/208 (54.33%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E+ P V IS     EGD          W  G  +L+ +    DNI +P R +DKP  +P++D++ I G GTV   RVE G L
Sbjct:   52 IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVE---DEEIIELVEMEVRELLAEQDYD-EEAPIVHISALKALEGDE--------KW--GKQILELMQACDDNIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTL 238          
The following BLAST results are available for this feature:
BLAST of CX296318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MICLU7.777e-2736.23Elongation factor Tu OS=Micrococcus luteus GN=tuf ... [more]
EFTU_EHRCJ7.777e-2736.10Elongation factor Tu OS=Ehrlichia canis (strain Ja... [more]
EFTU_DESAH7.777e-2736.71Elongation factor Tu OS=Desulfobacterium autotroph... [more]
EFTU_CORK47.777e-2740.00Elongation factor Tu OS=Corynebacterium kroppenste... [more]
EFTU_CHLT37.777e-2736.27Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_ANAPZ7.777e-2736.10Elongation factor Tu OS=Anaplasma phagocytophilum ... [more]
EFTU1_STRAW7.777e-2736.41Elongation factor Tu 1 OS=Streptomyces avermitilis... [more]
EFTU_SYNS91.016e-2634.95Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SULMW1.016e-2635.75Elongation factor Tu OS=Sulcia muelleri (strain GW... [more]
EFTU_CORGL1.016e-2637.98Elongation factor Tu OS=Corynebacterium glutamicum... [more]

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Properties
Property NameValue
Genbank descriptionC05138G05SK FerrChloL1 Citrus clementina cDNA clone C05138G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296318 ID=CX296318; Name=CX296318; organism=Citrus clementina; type=EST; length=674bp
ACGAGGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTG
ACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCC
CTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGT
CCCAGTGAGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGA
CATTTGGCCCCTCTGGATTGACAC
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