CX296318

Overview
NameCX296318
Unique NameCX296318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CORGB (Elongation factor Tu OS=Corynebacterium glutamicum (strain R) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 79/208 (37.98%), Postives = 113/208 (54.33%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E+ P V IS     EGD          W  G  +L+ +    DNI +P R +DKP  +P++D++ I G GTV   RVE G L
Sbjct:   52 IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVE---DEEIIELVEMEVRELLAEQDYD-EEAPIVHISALKALEGDE--------KW--GKQILELMQACDDNIPDPVRETDKPFLMPIEDIFTITGRGTVVTGRVERGTL 238          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_ACICJ (Elongation factor Tu OS=Acidiphilium cryptum (strain JF-5) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 74/205 (36.10%), Postives = 109/205 (53.17%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NKMD   P       + +  EV   L K  +  + +P   I G     + + +  L       L++A+D+ I +P+RP DKP  +P++DV+ I G GTV   RVE G++K G
Sbjct:   50 IDAAPEERARGITIATAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPALVVFLNKMDMADPDL----VELVEMEVRDLLSKYEFPGDDIPI--IKGSALCALEDSNAELGREAILKLMEAVDSYIPQPERPKDKPFLMPVEDVFSISGRGTVVTGRVERGIIKVG 241          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU1_STRCU (Elongation factor Tu-1 OS=Streptomyces collinus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 76/204 (37.25%), Postives = 110/204 (53.92%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGP-TLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +      +  V+E+ S  +  G +   V    +   EGD         +W +    L+ A+D NI EP+R  DKP  +P++DV+ I G GTV   R+E GVLK
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTETRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDEEILELVELEVRELLSEYEFPGDDLPVVRVSALKALEGDK--------EWGQSVLNLMQAVDENIPEPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLK 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: CYSN_PSYIN (Sulfate adenylyltransferase subunit 1 OS=Psychromonas ingrahamii (strain 37) GN=cysN PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.016e-26
Identity = 74/210 (35.24%), Postives = 111/210 (52.86%), Query Frame = 2
Query:   11 FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYK-----IGGIGTVPVSRVETG 625
            F  + ++D L++ERE+GITID+A   F T +    + D PGH  + +NM+TG S  D A+++ID+  G          QTR H+ +   LG+K ++   NKMDA    Y +A Y +I  +   + K++  N   + FVPIS  +GDN++  S N+ WY G  LL  L+ I      +DK  RL +Q V +      G  GTV    +  G
Sbjct:   73 FDLSLLVDGLQSEREQGITIDVAYRYFATEQRKFIIADTPGHEQYTRNMVTGASTCDLAIILIDARYG-------VQVQTRRHSYICSLLGIKHLVVAVNKMDAV--DYDQAVYKKIKADYREFAKQL--NIADIRFVPISALKGDNVVNESENMTWYPGSPLLRLLNTIQIDTDINDK-FRLAVQYVNRPNLDFRGFCGTVASGEIRVG 270          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LACLS (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV   R+E G +K G
Sbjct:   50 IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LACLM (Elongation factor Tu OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV   R+E G +K G
Sbjct:   50 IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LACLA (Elongation factor Tu OS=Lactococcus lactis subsp. lactis GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY-KGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LL+  +GVK +I   NK D       +   + +  EV   L +  +  + +P +      G  +   +    W  K   L+D +D  I  P+R +DKPL LP++DV+ I G GTV   R+E G +K G
Sbjct:   50 IDAAPEERERGITINTAHIEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLSRQVGVKYLIVFLNKADLVD---DEELMELVEMEVRDLLSEYDFPGDDIPVI-----AGSALGALNGEPQWVAKVEELMDIVDEYIPTPERDTDKPLLLPVEDVFSITGRGTVASGRIERGTVKVG 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_EUBE2 (Elongation factor Tu OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 74/205 (36.10%), Postives = 108/205 (52.68%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +DK   ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK D           D  ++E+   L + G+  +  P +  S  +         N +W  G  +L+ +  I+E    P+R +DKP  +P++DV+ I G GTV   RVE GVL
Sbjct:   51 IDKAPEERERGITISTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVAATDGVM-------AQTREHILLARQVGVPYIVVFMNKCDMVDDPELLELVDMEIREL---LNEYGFPGDDTPIIQGSALKA----LEDPNSEW--GDKILELMHTIDEYVPDPERDTDKPFLMPVEDVFSITGRGTVATGRVERGVL 239          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CORDI (Elongation factor Tu OS=Corynebacterium diphtheriae GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 74/206 (35.92%), Postives = 115/206 (55.83%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDAL----DNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L +  Y+ E+ P + IS  +     E+ T        +++D +    D+I +P+R +DKP  +P++D++ I G GTV   RVE G LK
Sbjct:   52 IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEIRELLAEQDYD-EEAPIIHISALKALEGDEKWTQ-------SIIDLMQACDDSIPDPERETDKPFLMPIEDIFTITGRGTVVTGRVERGSLK 239          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CLAMS (Elongation factor Tu OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=tuf PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.327e-26
Identity = 77/206 (37.38%), Postives = 111/206 (53.88%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGD-NMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +D    ER+RGITI+I+  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P V +SG    EGD   +E+           L++A+D +I EP R  DKP  +P++DV+ I G GTV   R E G L
Sbjct:   53 IDSAPEERQRGITINISHVEYETPKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLAKQVGVPYLLVALNKSDMVD---DEEILELVELEVRELLSSQDFDGDNAPVVQVSGLKALEGDEKWVEQIVK--------LMEAVDESIPEPVRDKDKPFLMPVEDVFTITGRGTVVTGRAERGTL 240          
The following BLAST results are available for this feature:
BLAST of CX296318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CORGB1.016e-2637.98Elongation factor Tu OS=Corynebacterium glutamicum... [more]
EFTU_ACICJ1.016e-2636.10Elongation factor Tu OS=Acidiphilium cryptum (stra... [more]
EFTU1_STRCU1.016e-2637.25Elongation factor Tu-1 OS=Streptomyces collinus GN... [more]
CYSN_PSYIN1.016e-2635.24Sulfate adenylyltransferase subunit 1 OS=Psychromo... [more]
EFTU_LACLS1.327e-2637.38Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLM1.327e-2637.38Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_LACLA1.327e-2637.38Elongation factor Tu OS=Lactococcus lactis subsp. ... [more]
EFTU_EUBE21.327e-2636.10Elongation factor Tu OS=Eubacterium eligens (strai... [more]
EFTU_CORDI1.327e-2635.92Elongation factor Tu OS=Corynebacterium diphtheria... [more]
EFTU_CLAMS1.327e-2637.38Elongation factor Tu OS=Clavibacter michiganensis ... [more]

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Properties
Property NameValue
Genbank descriptionC05138G05SK FerrChloL1 Citrus clementina cDNA clone C05138G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296318 ID=CX296318; Name=CX296318; organism=Citrus clementina; type=EST; length=674bp
ACGAGGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTG
ACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCC
CTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGT
CCCAGTGAGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGA
CATTTGGCCCCTCTGGATTGACAC
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