CX296318

Overview
NameCX296318
Unique NameCX296318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBK (Elongation factor Tu OS=Clostridium botulinum (strain Okra / Type B1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV   RVE GVL  G
Sbjct:   50 IDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CLOBH (Elongation factor Tu OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV   RVE GVL  G
Sbjct:   50 IDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_CLOB1 (Elongation factor Tu OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 76/207 (36.71%), Postives = 115/207 (55.56%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +       E+V+ EV   L + G+  +  P V  S  E   ++E   N +  K    L++A+D+ I  P+R +D+P  +P++DV+ I G GTV   RVE GVL  G
Sbjct:   50 IDKAPEEKERGITINTSHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVQYIVVFLNKAD----QVDDPELIELVEMEVRELLNEYGFPGDDTPIVVGSALE---VLENQDNAEKTKCIDELMEAIDSYIPTPERATDQPFLMPVEDVFTITGRGTVATGRVERGVLHTG 242          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_BART1 (Elongation factor Tu OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 77/213 (36.15%), Postives = 108/213 (50.70%), Query Frame = 2
Query:    5 GSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            G FK    +D    ER RGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L K  +  + VP V  S        ++S   D  +   L+  +D  I  P+RP D+P  +P++DV+ I G GTV   RVE GV+K G
Sbjct:   37 GEFKAYDQIDAAPEERARGITISTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPAIVVFLNKVDQVD---DSELLDLVELEVRELLSKYDFPGDDVPIVKGSALAALEDKDKSIGEDAVR--LLMSEVDKYIPTPERPVDQPFLMPIEDVFSISGRGTVVTGRVERGVIKVG 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 76/208 (36.54%), Postives = 110/208 (52.88%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   ERERGITI  A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       K   D +  EV   L +  +   ++P V    +   EGD        L       L++A+D  I  P+R +DKP  +P++DV+ I G GTV   RVE G++K G
Sbjct:   50 IDKAPEERERGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---DKELLDLVELEVRELLSEYDFPGNEIPIVKGSALKALEGD-----KGELGEQAIFKLMEAVDAYIPTPQRATDKPFLMPVEDVFSISGRGTVATGRVERGIVKVG 242          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU1_STRRA (Elongation factor Tu-1 OS=Streptomyces ramocissimus GN=tuf1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 77/203 (37.93%), Postives = 111/203 (54.68%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +DK   ER+RGITI IA  +++T   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK D    +      +  V+E+ S  +  G +   V    +   EGD    +S  LD      L+ A+D +I EP+R  DKP  +P++DV+ I G GTV   R+E GVLK
Sbjct:   52 IDKAPEERQRGITISIAHVEYQTEARHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYIVVALNKADMVDDEEIMELVELEVRELLSEYEFPGDDLPVVRVSALKALEGDAQWTQSV-LD------LMKAVDESIPEPERDVDKPFLMPIEDVFTITGRGTVVTGRIERGVLK 240          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.263e-26
Identity = 74/206 (35.92%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDN-MIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +DK   E++RGITI  A  ++ET K +   +D PGH D++KNMITG +Q D  +L++    G          QT+EH LLA  +GV  ++C  NK+D           +  ++E+ S+ K  G +   +    +S  +G N  I R   L       L+DA+D  I +P R  DKP  +P++DV+ I G GTV   R+E GV+K G
Sbjct:  105 IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLARQVGVPSLVCFLNKVDVVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNDEIGRQAIL------KLMDAVDEYIPDPVRVLDKPFLMPIEDVFSIQGRGTVATGRIEQGVIKVG 297          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_STROR (Elongation factor Tu OS=Streptococcus oralis GN=tuf PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 74/206 (35.92%), Postives = 113/206 (54.85%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E            L++ +D  I EP+R ++KPL LP++DV+ I G GTV   R++ G ++
Sbjct:   53 IDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDII-------MELMNTVDEYIPEPERDTEKPLLLPVEDVFSITGRGTVASGRIDRGTVR 241          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_PELPB (Elongation factor Tu OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 75/206 (36.41%), Postives = 110/206 (53.40%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P V    +   EGD   E++          L+DA+D+ I +P R  DKP  +P++DV+ I G GTV   R+E G +K
Sbjct:   50 IDKAPEERERGITISTAHVEYQTKKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPSLVVFLNKVDIADPEL----IELVELELRELLTQYNFPGDDIPIVKGSALKALEGDPEGEKAI-------MELMDAVDSFIPDPVRDIDKPFLMPVEDVFSISGRGTVGTGRIERGRIK 237          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_NOCFA (Elongation factor Tu OS=Nocardia farcinica GN=tuf PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.955e-26
Identity = 78/206 (37.86%), Postives = 114/206 (55.34%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +DK   E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +SG    EGD          W K    L+DA+D +I +P R +DKP  +P++DV+ I G GTV   RVE G++
Sbjct:   52 IDKAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEEILELVEMEVRELLAAQEFD-EEAPVVRVSGLKALEGDP--------KWVKSVEDLMDAVDESIPDPVRETDKPFLMPIEDVFTITGRGTVVTGRVERGII 238          
The following BLAST results are available for this feature:
BLAST of CX296318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CLOBK2.263e-2636.71Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOBH2.263e-2636.71Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_CLOB12.263e-2636.71Elongation factor Tu OS=Clostridium botulinum (str... [more]
EFTU_BART12.263e-2636.15Elongation factor Tu OS=Bartonella tribocorum (str... [more]
EFTU_ANADE2.263e-2636.54Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
EFTU1_STRRA2.263e-2637.93Elongation factor Tu-1 OS=Streptomyces ramocissimu... [more]
EFTM_ARATH2.263e-2635.92Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
EFTU_STROR2.955e-2635.92Elongation factor Tu OS=Streptococcus oralis GN=tu... [more]
EFTU_PELPB2.955e-2636.41Elongation factor Tu OS=Pelodictyon phaeoclathrati... [more]
EFTU_NOCFA2.955e-2637.86Elongation factor Tu OS=Nocardia farcinica GN=tuf ... [more]

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Properties
Property NameValue
Genbank descriptionC05138G05SK FerrChloL1 Citrus clementina cDNA clone C05138G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296318 ID=CX296318; Name=CX296318; organism=Citrus clementina; type=EST; length=674bp
ACGAGGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTG
ACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCC
CTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGT
CCCAGTGAGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGA
CATTTGGCCCCTCTGGATTGACAC
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