CX296318

Overview
NameCX296318
Unique NameCX296318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:362..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_RICBR (Elongation factor Tu OS=Rickettsia bellii (strain RML369-C) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 72/211 (34.12%), Postives = 112/211 (53.08%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVV 649
            +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+ I +P R ++KP  +P++DV+ I G GTV   R+E G +K G  V
Sbjct:   51 IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKPFLMPIEDVFSISGRGTVVTGRIEAGKVKVGEAV 244          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 72/211 (34.12%), Postives = 112/211 (53.08%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPGMVV 649
            +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+ I +P R ++KP  +P++DV+ I G GTV   R+E G +K G  V
Sbjct:   51 IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKPFLMPIEDVFSISGRGTVVTGRIEAGKVKVGEAV 244          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_PELPD (Elongation factor Tu OS=Pelobacter propionicus (strain DSM 2379) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 74/214 (34.58%), Postives = 111/214 (51.87%), Query Frame = 2
Query:    2 RGSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +  FK    +D    ERERGITI  A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V  S  +   +    + L       L+DA+D+ I +P+R  DKP  +P++DV+ I G GTV   RVE G++K G
Sbjct:   41 QAEFKAFDQIDNAPEERERGITIATAHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVD---DEELLELVELEIRELLSSYDFPGDDIPIVKGSALKA--LEGEKSELGEDSIIKLMDAVDSYIPDPERAVDKPFLMPVEDVFSISGRGTVATGRVERGIVKVG 242          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_MYCVP (Elongation factor Tu OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 76/206 (36.89%), Postives = 113/206 (54.85%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +D    ER+RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ E+ P V +S     EGD          W K    L++A+D +I +P R +DKP  +P++DV+ I G GTV   RVE G++
Sbjct:   52 IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKADMVD---DEELIELVEMEVRELLAAQDFD-EEAPVVKVSALKALEGDE--------KWVKSVEELMEAVDESIPDPVRETDKPFLMPVEDVFTITGRGTVVTGRVERGII 238          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_MYCA9 (Elongation factor Tu OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 75/203 (36.95%), Postives = 110/203 (54.19%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG-PTLLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVL 631
            +D    E+ RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D    +      +  V+E+ S     G N   V    +   EGD         +W K    L+DA+D +I +P R ++KP  +P++DV+ I G GTV   RVE GV+
Sbjct:   52 IDNAPEEKARGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDMVDDEELLELVEMEVRELLSSQDFDGDNAPVVRVSALKALEGD--------AEWGKTVADLMDAVDESIPDPVRETEKPFLMPVEDVFTITGRGTVVTGRVERGVI 239          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LEPIN (Elongation factor Tu OS=Leptospira interrogans GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 72/206 (34.95%), Postives = 104/206 (50.49%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  +I   NK D           + +  +V   L K  +  +  P V    +   EGD      + +       L++ALD  +  PKR  DKP  +P++DV+ I G GTV   RVE GVLK
Sbjct:   52 IDNAPEEKARGITIATSHQEYETANRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGPMP-------QTKEHILLARQVGVPYVIVFINKADMLAADERAEMIEMVEMDVRELLNKYSFPGDTTPIVHGSAVKALEGD-----ESEIGMPAILKLMEALDTFVPNPKRVIDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LEPIC (Elongation factor Tu OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 72/206 (34.95%), Postives = 104/206 (50.49%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLK 634
            +D    E+ RGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  +I   NK D           + +  +V   L K  +  +  P V    +   EGD      + +       L++ALD  +  PKR  DKP  +P++DV+ I G GTV   RVE GVLK
Sbjct:   52 IDNAPEEKARGITIATSHQEYETANRHYAHVDCPGHADYVKNMITGAAQMDAAILVVSATDGPMP-------QTKEHILLARQVGVPYVIVFINKADMLAADERAEMIEMVEMDVRELLNKYSFPGDTTPIVHGSAVKALEGD-----ESEIGMPAILKLMEALDTFVPNPKRVIDKPFLMPVEDVFSITGRGTVATGRVEQGVLK 245          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 75/208 (36.06%), Postives = 108/208 (51.92%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    E+ERGITI+ A  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P V    +   EGD   +            L+D +D  I  P+R +DKP  +P++DV+ I G GTV   R++ G +K G
Sbjct:   51 IDAAPEEKERGITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCDLVD---DPELIDLVEMEVRDLLTEYDYPGDDIPVVRGSALKALEGDKEAQEQI-------LKLMDTVDEYIPTPERQTDKPFLMPVEDVFTITGRGTVASGRIDRGTVKVG 241          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LACCB (Elongation factor Tu OS=Lactobacillus casei (strain BL23) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 74/211 (35.07%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P +    +   EGD   E+           +++ +D I+E    P R +DKP  +P++DV+ I G GTV   R++ G +K G
Sbjct:   51 IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DPELIDLVEMEVRELLSEYDYPGDDIPVIRGSALKALEGDPEQEK----------VIMELMDTIDEYIPTPVRETDKPFLMPVEDVFTITGRGTVASGRIDRGTVKIG 241          
BLAST of CX296318 vs. ExPASy Swiss-Prot
Match: EFTU_LACC3 (Elongation factor Tu OS=Lactobacillus casei (strain ATCC 334) GN=tuf PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.123e-25
Identity = 74/211 (35.07%), Postives = 110/211 (52.13%), Query Frame = 2
Query:   29 LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSTNLDWYKGPTLLDALDNINE----PKRPSDKPLRLPLQDVYKIGGIGTVPVSRVETGVLKPG 640
            +D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P +    +   EGD   E+           +++ +D I+E    P R +DKP  +P++DV+ I G GTV   R++ G +K G
Sbjct:   51 IDAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DPELIDLVEMEVRELLSEYDYPGDDIPVIRGSALKALEGDPEQEK----------VIMELMDTIDEYIPTPVRETDKPFLMPVEDVFTITGRGTVASGRIDRGTVKIG 241          
The following BLAST results are available for this feature:
BLAST of CX296318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_RICBR1.123e-2534.12Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_RICB81.123e-2534.12Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_PELPD1.123e-2534.58Elongation factor Tu OS=Pelobacter propionicus (st... [more]
EFTU_MYCVP1.123e-2536.89Elongation factor Tu OS=Mycobacterium vanbaalenii ... [more]
EFTU_MYCA91.123e-2536.95Elongation factor Tu OS=Mycobacterium abscessus (s... [more]
EFTU_LEPIN1.123e-2534.95Elongation factor Tu OS=Leptospira interrogans GN=... [more]
EFTU_LEPIC1.123e-2534.95Elongation factor Tu OS=Leptospira interrogans ser... [more]
EFTU_LACH41.123e-2536.06Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_LACCB1.123e-2535.07Elongation factor Tu OS=Lactobacillus casei (strai... [more]
EFTU_LACC31.123e-2535.07Elongation factor Tu OS=Lactobacillus casei (strai... [more]

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Properties
Property NameValue
Genbank descriptionC05138G05SK FerrChloL1 Citrus clementina cDNA clone C05138G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296318 ID=CX296318; Name=CX296318; organism=Citrus clementina; type=EST; length=674bp
ACGAGGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTCAAGGCTGAGC
GTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTTCGAGACCACC
AAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTGACTTTATCAA
GAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTCCTTATCATTG
ACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGATGGTCAGACT
CGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGCAGATGATTTG
CTGCTGTAACAAGATGGACGCCACCACCCCCAAGTACTCAAAGGCTAGGT
ACGATGAAATTGTGAAGGAGGTCTCTTCCTACCTGAAGAAGGTTGGATAC
AACCCCGAGAAAGTCCCATTCGTGCCCATCTCTGGTTTCGAGGGTGACAA
CATGATTGAGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGC
TGGACGCTCTTGACAATATCAATGAGCCAAAGAGGCCCTCAGACAAGCCC
CTTCGTCTGCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGT
CCCAGTGAGTCGCGTTGAGACCGGTGTCCTCAAGCCTGGTATGGTGGTGA
CATTTGGCCCCTCTGGATTGACAC
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