CX296319 | Citrus Genome Database

Overview


Name	CX296319
Unique Name	CX296319
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	718

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.127e-38
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.127e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.127e-38
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.127e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.127e-38
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.127e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.127e-38
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.127e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.127e-38
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.127e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.127e-38
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.127e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.127e-38
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.127e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 1

Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   IL GNK DM E +R V T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++++
Sbjct:   59 FVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDM-EDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES 198

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.694e-38
Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 1

Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   IL GNK DM E +R V T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++++
Sbjct:   59 FVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDM-EDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES 198

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.911e-38
Identity = 75/151 (49.67%), Postives = 107/151 (70.86%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R + +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE + + A++I +++     D   E   IKI
Sbjct:   38 TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKI 187

HSP 2 Score: 29.261 bits (64), Expect = 1.911e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31

The following BLAST results are available for this feature:

BLAST of CX296319 vs. ExPASy Swiss-Prot

BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAB2A_RABIT	1.127e-38	50.33	Ras-related protein Rab-2A OS=Oryctolagus cuniculu...	[more]
RAB2A_PONAB	1.127e-38	50.33	Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2...	[more]
RAB2A_MOUSE	1.127e-38	50.33	Ras-related protein Rab-2A OS=Mus musculus GN=Rab2...	[more]
RAB2A_MACFA	1.127e-38	50.33	Ras-related protein Rab-2A OS=Macaca fascicularis ...	[more]
RAB2A_HUMAN	1.127e-38	50.33	Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2...	[more]
RAB2A_CHICK	1.127e-38	50.33	Ras-related protein Rab-2A OS=Gallus gallus GN=RAB...	[more]
RAB2A_CANFA	1.127e-38	50.33	Ras-related protein Rab-2A OS=Canis familiaris GN=...	[more]
RAB3C_RAT	1.694e-38	53.19	Ras-related protein Rab-3C OS=Rattus norvegicus GN...	[more]
RAB3C_MOUSE	1.694e-38	53.19	Ras-related protein Rab-3C OS=Mus musculus GN=Rab3...	[more]
RAB2B_MOUSE	1.911e-38	49.67	Ras-related protein Rab-2B OS=Mus musculus GN=Rab2...	[more]

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Properties


Property Name	Value
Genbank description	C05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC