CX296319 | Citrus Genome Database

Overview


Name	CX296319
Unique Name	CX296319
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	718

Libraries


Library Name	Type
FerrChloL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 9.757e-34
Identity = 66/150 (44.00%), Postives = 101/150 (67.33%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 525
            TIG++F  RT++++G+ +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W++ +  HA  N+  +L+GNK D+ +  RAV T   Q+ A++ G+ F ETSA   LNVE+ F +I  ++ + ++     ++  T   N
Sbjct:   44 TIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDL-KHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANAN 192

HSP 2 Score: 23.0978 bits (48), Expect = 9.757e-34
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   21 SGVGKSNLLSRFTRNEF 37

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++  + F ETSA  + NVEE F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.271e-33
Identity = 66/131 (50.38%), Postives = 93/131 (70.99%), Query Frame = 1

Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIG++F  R+I++DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA  + NVE  F +I  +I
Sbjct:   43 TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-33
Identity = 11/17 (64.71%), Postives = 12/17 (70.59%), Query Frame = 2

Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGKS LL RF+   F
Sbjct:   20 SGVGKSNLLSRFTRNEF 36

The following BLAST results are available for this feature:

BLAST of CX296319 vs. ExPASy Swiss-Prot

BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
RAA2A_ARATH	9.757e-34	44.00	Ras-related protein RABA2a OS=Arabidopsis thaliana...	[more]
RB11B_RAT	1.271e-33	50.38	Ras-related protein Rab-11B OS=Rattus norvegicus G...	[more]
RB11B_MOUSE	1.271e-33	50.38	Ras-related protein Rab-11B OS=Mus musculus GN=Rab...	[more]
RB11B_HUMAN	1.271e-33	50.38	Ras-related protein Rab-11B OS=Homo sapiens GN=RAB...	[more]
RB11B_BOVIN	1.271e-33	50.38	Ras-related protein Rab-11B OS=Bos taurus GN=RAB11...	[more]
RB11A_RAT	1.271e-33	50.38	Ras-related protein Rab-11A OS=Rattus norvegicus G...	[more]
RB11A_RABIT	1.271e-33	50.38	Ras-related protein Rab-11A OS=Oryctolagus cunicul...	[more]
RB11A_PONAB	1.271e-33	50.38	Ras-related protein Rab-11A OS=Pongo abelii GN=RAB...	[more]
RB11A_PIG	1.271e-33	50.38	Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11...	[more]
RB11A_MOUSE	1.271e-33	50.38	Ras-related protein Rab-11A OS=Mus musculus GN=Rab...	[more]

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Properties


Property Name	Value
Genbank description	C05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC