CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10149 contig Ccv1_Contig10149:161..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 7.261e-51
Identity = 90/151 (59.60%), Postives = 119/151 (78.81%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG+DFKIRT+E DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ E+ R V    G+ALADE GI F ETSAK   NVE+ F ++A +IK R+A     + ++P T+++
Sbjct:   40 TIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM 189

HSP 2 Score: 37.3502 bits (85), Expect = 7.261e-51
Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D S+  S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDSYLESYISTI 41
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.608e-50
Identity = 87/149 (58.39%), Postives = 115/149 (77.18%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKI 522
            TIG+DFKI+T+ LDGK IKLQIWDTAGQERFRTIT++YYRGA GI+LVYD TD+ SF N++ W+  I+++A +NVNK+LVGNK D+  +++ V +++ ++ A+ YGI F ETSAK   NVEE F S+ARDIK RLAD     +P  + I
Sbjct:   42 TIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDL-VNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDI 189

HSP 2 Score: 36.1946 bits (82), Expect = 1.608e-50
Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D S+T + I+ +
Sbjct:   19 SGVGKSCLLLRFADDSWTDTHISTI 43
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.561e-50
Identity = 87/151 (57.62%), Postives = 120/151 (79.47%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ-TIKIN 525
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD+ GI F ETSAK   NVE+ F ++A +IK R+    + ++ + ++KIN
Sbjct:   43 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKIN 192

HSP 2 Score: 38.5058 bits (88), Expect = 3.561e-50
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   20 SGVGKSCLLLRFADDTYTESYISTI 44
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.562e-50
Identity = 87/144 (60.42%), Postives = 112/144 (77.78%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 507
            TIG+DFKIRT+ELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+   K+ V     +A ADE GI F ETSAK   NVE+ F ++A +IK R+A      +P
Sbjct:   40 TIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKP 182

HSP 2 Score: 38.5058 bits (88), Expect = 3.562e-50
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 6.052e-50
Identity = 88/131 (67.18%), Postives = 114/131 (87.02%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
            TIGIDFKIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:   40 TIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169

HSP 2 Score: 32.7278 bits (73), Expect = 6.052e-50
Identity = 11/25 (44.00%), Postives = 21/25 (84.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGK+CL++RF++ +F  ++I+ +
Sbjct:   17 SGVGKTCLIIRFAEDNFNNTYISTI 41
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 7.886e-50
Identity = 89/151 (58.94%), Postives = 116/151 (76.82%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   43 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192

HSP 2 Score: 38.5058 bits (88), Expect = 7.886e-50
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   20 SGVGKSCLLLRFADDTYTESYISTI 44
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 7.886e-50
Identity = 89/151 (58.94%), Postives = 116/151 (76.82%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   43 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192

HSP 2 Score: 38.5058 bits (88), Expect = 7.886e-50
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   20 SGVGKSCLLLRFADDTYTESYISTI 44
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 7.886e-50
Identity = 89/151 (58.94%), Postives = 116/151 (76.82%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   43 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192

HSP 2 Score: 38.5058 bits (88), Expect = 7.886e-50
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   20 SGVGKSCLLLRFADDTYTESYISTI 44
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 7.886e-50
Identity = 89/151 (58.94%), Postives = 116/151 (76.82%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   43 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192

HSP 2 Score: 38.5058 bits (88), Expect = 7.886e-50
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   20 SGVGKSCLLLRFADDTYTESYISTI 44
[Close]
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 7.886e-50
Identity = 89/151 (58.94%), Postives = 116/151 (76.82%), Query Frame = 1 
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+    T   AE   +KI
Sbjct:   43 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKI 192

HSP 2 Score: 38.5058 bits (88), Expect = 7.886e-50
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   20 SGVGKSCLLLRFADDTYTESYISTI 44
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC1_ORYSJ7.261e-5159.60Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB1D_DICDI1.608e-5058.39Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1A_LYMST3.561e-5057.62Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
YPTV1_VOLCA3.562e-5060.42GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB13_MESAU6.052e-5067.18Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB1A_RAT7.886e-5058.94Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG7.886e-5058.94Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE7.886e-5058.94Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN7.886e-5058.94Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA7.886e-5058.94Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
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