CX296319
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2) HSP 1 Score: 185.267 bits (469), Expect = 1.028e-49 Identity = 92/153 (60.13%), Postives = 121/153 (79.08%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
TIGIDFKIRT+E++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS V ++L+GNK DM E+KR V + + LA E+ I+FFETSAK+++NV+E F S+ARDI L T R + K + D
Sbjct: 40 TIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI---LLKTGGRRSGNSSKPSSTD 188 HSP 2 Score: 33.113 bits (74), Expect = 1.028e-49 Identity = 11/25 (44.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGK+CL++RF++ +F +++I+ +
Sbjct: 17 SGVGKTCLIIRFAEDNFNSTYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1) HSP 1 Score: 185.267 bits (469), Expect = 1.340e-49 Identity = 86/131 (65.65%), Postives = 114/131 (87.02%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
TIGIDFKIRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS V ++L+GNK DM E+KR V + LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct: 40 TIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169 HSP 2 Score: 32.7278 bits (73), Expect = 1.340e-49 Identity = 11/25 (44.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGK+CL++RF++ +F ++I+ +
Sbjct: 17 SGVGKTCLIIRFAEDNFNNTYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.340e-49 Identity = 85/131 (64.89%), Postives = 114/131 (87.02%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
TIGIDF+IRT++++GK+IKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS V ++L+GNK DM E+KR V + LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct: 40 TIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169 HSP 2 Score: 33.8834 bits (76), Expect = 1.340e-49 Identity = 12/31 (38.71%), Postives = 24/31 (77.42%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPLVLTSRL 100
SGVGK+CL++RF++ +F ++I+ + + R+
Sbjct: 17 SGVGKTCLIIRFAEDNFNNTYISTIGIDFRI 47
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.747e-49 Identity = 85/137 (62.04%), Postives = 110/137 (80.29%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 486
TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++A +NVNK+LVGNK+D+ +KR V T + A+ GI+F ETSAK NVE+ F +A IK+R+A+
Sbjct: 40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDL-TAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMAN 175 HSP 2 Score: 38.5058 bits (88), Expect = 1.747e-49 Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKSCLLLRF+D ++T S+I+ +
Sbjct: 17 SGVGKSCLLLRFADDTYTESYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.277e-49 Identity = 87/151 (57.62%), Postives = 115/151 (76.16%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK D+ +K+ V + + AD GI F ETSAK NVE+ F ++A +IK+R+ T +E + I
Sbjct: 40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL-TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGATSGGSEKSNVNI 189 HSP 2 Score: 38.5058 bits (88), Expect = 2.277e-49 Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKSCLLLRF+D ++T S+I+ +
Sbjct: 17 SGVGKSCLLLRFADDTYTESYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 2.968e-49 Identity = 86/131 (65.65%), Postives = 114/131 (87.02%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 468
TIGIDFKIRT++++GKRIKLQ+WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS V ++L+GNK DM E+KR V + + LA E+ I+FFETSAK+++NV+E F S+ARDI
Sbjct: 40 TIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169 HSP 2 Score: 33.113 bits (74), Expect = 2.968e-49 Identity = 11/25 (44.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGK+CL++RF++ +F +++I+ +
Sbjct: 17 SGVGKTCLIIRFAEDNFNSTYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1) HSP 1 Score: 177.948 bits (450), Expect = 1.895e-48 Identity = 85/151 (56.29%), Postives = 118/151 (78.15%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIK 519
F TIGIDFKI+T++++GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D +LVGNK+DMD R V +G+ALA E G+ F E+SAK + NV E+FF++AR I++++ D++ + P + K
Sbjct: 49 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD--TRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKI-DSNKLSGPNSGK 196 HSP 2 Score: 36.1946 bits (82), Expect = 1.895e-48 Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKSCLL+RF + F SFIT +
Sbjct: 29 SGVGKSCLLVRFVEDKFNPSFITTI 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.897e-48 Identity = 86/151 (56.95%), Postives = 116/151 (76.82%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK NVE+ F ++A +IK+R+ S E +KI+
Sbjct: 40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189 HSP 2 Score: 38.5058 bits (88), Expect = 1.897e-48 Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKSCLLLRF+D ++T S+I+ +
Sbjct: 17 SGVGKSCLLLRFADDTYTESYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.897e-48 Identity = 86/151 (56.95%), Postives = 116/151 (76.82%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK NVE+ F ++A +IK+R+ S E +KI+
Sbjct: 40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189 HSP 2 Score: 38.5058 bits (88), Expect = 1.897e-48 Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKSCLLLRF+D ++T S+I+ +
Sbjct: 17 SGVGKSCLLLRFADDTYTESYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 1.897e-48 Identity = 86/151 (56.95%), Postives = 116/151 (76.82%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK NVE+ F ++A +IK+R+ S E +KI+
Sbjct: 40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189 HSP 2 Score: 38.5058 bits (88), Expect = 1.897e-48 Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKSCLLLRF+D ++T S+I+ +
Sbjct: 17 SGVGKSCLLLRFADDTYTESYISTI 41 The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bpback to top |