CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RYL2_YARLI (Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica GN=RYL2 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.481e-17
Identity = 55/152 (36.18%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM---DESKRAVPTSKGQALADEY---GIKFFETSAKTNLNVEEVF-FSIARDIKQRLADTDSRAEPQ 510
            TIG  F  + + ++   ++LQIWDTAGQERFR++   YYR A   +L YDVT  +SF+ +  W+  ++Q+ S ++   +VG K D+   + S R VP  +    A E+        E SAK +  VEEVF   I + + +R AD   +   Q
Sbjct:   37 TIGASFSRKRVVVNDTTVRLQIWDTAGQERFRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKVDLVKDEPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKLLDKREADEQQKHNSQ 188          

HSP 2 Score: 21.557 bits (44), Expect = 6.481e-17
Identity = 7/16 (43.75%), Postives = 11/16 (68.75%), Query Frame = 2
Query:   11 GVGKSCLLLRFSDGSF 58
            GVGK+C + R+ +  F
Sbjct:   15 GVGKTCFVTRYVNNKF 30          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  109 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
            E+DG+   L + DTAGQE +  +   Y R   G LLVY++T  SSF+ I  + + I      D    +LV NK D+ E++R V  ++G+ LA      + ETSAK  LNVEE F+S+ R I++
Sbjct:   50 EIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL-EAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRR 171          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 47/126 (37.30%), Postives = 74/126 (58.73%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
            + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+    R V T + Q LA  YGI F ETSAKT   V++ F+++ R+I++
Sbjct:   42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 165          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 51/146 (34.93%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
            + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  + R V + + Q LA  YGI + +TSAKT   VE+ F+++ R+I+Q           +  K+N PD
Sbjct:   42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIKTSAKTRQGVEDAFYTLVREIRQH----------KLRKLNPPD 175          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RASH_MSVHA (Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
            + + +DG+   L I DT GQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q           +  K+N PD
Sbjct:   94 KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH----------KLRKLNPPD 227          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
            + + +DG+   L   DTAGQE +  +   Y R   G L V+ + +  SF +I  +   I++   SD+V  +LVGNK D+  + R V + + Q LA  YGI + ETSAKT   VE+ F+++ R+I+Q           +  K+N PD
Sbjct:   42 KQVVIDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL--AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH----------KLRKLNPPD 175          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1B_RAT (Ras-related protein Rap-1b OS=Rattus norvegicus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +D+V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWSNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1B_PONAB (Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +D+V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1B_PANTR (Ras-related protein Rap-1b OS=Pan troglodytes GN=RAP1B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +D+V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1B_MOUSE (Ras-related protein Rap-1b OS=Mus musculus GN=Rap1b PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.069e-16
Identity = 47/128 (36.72%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +D+V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL-EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RYL2_YARLI6.481e-1736.18Ras-like GTP-binding protein RYL2 OS=Yarrowia lipo... [more]
RAS_SCHPO8.182e-1739.84Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RASK_MELGA8.182e-1737.30GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RASH_MSVMO8.182e-1734.93GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]
RASH_MSVHA1.069e-1634.93Transforming protein p29 OS=Harvey murine sarcoma ... [more]
RASH_MOUSE1.069e-1634.93GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAP1B_RAT1.069e-1636.72Ras-related protein Rap-1b OS=Rattus norvegicus GN... [more]
RAP1B_PONAB1.069e-1636.72Ras-related protein Rap-1b OS=Pongo abelii GN=RAP1... [more]
RAP1B_PANTR1.069e-1636.72Ras-related protein Rap-1b OS=Pan troglodytes GN=R... [more]
RAP1B_MOUSE1.069e-1636.72Ras-related protein Rap-1b OS=Mus musculus GN=Rap1... [more]

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Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
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