CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.027e-16
Identity = 46/158 (29.11%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   64 QFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-----DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKI 522
            ++  TIGID+ +  +++  + IK+ I+D AG   F  +   +Y+   G++LVYDV  + SF+ +  W+  ++Q        DN+  ++  NK D  +  R+V  S+G+  A+  G  +FETSA+T   + E+F +    I   L D   +  P ++ +
Sbjct:   44 KYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTK-HRSVDESEGRLWAESRGFLYFETSAQTGEGINEMFQTFYSAIID-LCDNGGKRPPSSMGV 199          

HSP 2 Score: 22.7126 bits (47), Expect = 4.027e-16
Identity = 7/23 (30.43%), Postives = 14/23 (60.87%), Query Frame = 2
Query:   14 VGKSCLLLRFSDGSFTTSFITPL 82
            VGKSC++ R+ +  F   ++  +
Sbjct:   27 VGKSCIIKRYCEKRFVPKYLATI 49          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 1
Query:   58 YYQFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQH---ASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 525
            + ++  T+G     + I LD   +KLQIWDT GQERFR++ + +Y+G+ G +L +DVTD  SF  +  W  ++         +   +++GNK D+++ K +     G     E  + +FE SAK ++NV + F  +A     R   T       +IK++
Sbjct:   34 FEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVVHG--WCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLS 190          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RASK_MONDO (GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 46/126 (36.51%), Postives = 73/126 (57.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
            + + +DG+   L I DTAGQE +  +   Y R   G L V+ + +  SF +I ++   I++   S++V  +LVGNK D+    R V T + Q LA  YGI F ETSAKT    ++ F+++ R+I++
Sbjct:   42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLARSYGIPFIETSAKTRQGGDDAFYTLVREIRK 165          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 47/142 (33.10%), Postives = 78/142 (54.93%), Query Frame = 1
Query:   76 TIGIDFKIR-TIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSR 498
            TIG  F  +  I  +GK +KL IWDTAGQERFR+IT  YY  ++G L+V+DVTD  SF+++  WI ++  +       ++V NK D+D++   V  ++ +    +    +   S+  +  V  +F  +   + +   + DSR
Sbjct:   45 TIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDIDKNNWRVSENEIKKFCRDNDCDYVFASSFESDTVNNLFGKMIDKMSEIKINPDSR 186          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.804e-16
Identity = 40/133 (30.08%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   64 QFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-----DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 447
            ++  TIGID+ +  +++  + IK+ I+D AG   F  +   +Y+   G++LVYDV  + SF+ + +W+  ++Q        +N+  ++  NK D  +  R +  S+G+  A+  G  +FETSA+T   + E+F
Sbjct:   44 KYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSK-HRCIDESEGRLWAESRGFLYFETSAQTGEGINEMF 175          

HSP 2 Score: 23.483 bits (49), Expect = 6.804e-16
Identity = 7/23 (30.43%), Postives = 15/23 (65.22%), Query Frame = 2
Query:   14 VGKSCLLLRFSDGSFTTSFITPL 82
            VGKSC++ R+ +  F + ++  +
Sbjct:   27 VGKSCIIKRYCEKRFVSKYLATI 49          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RIT1_HUMAN (GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            TI   +KIR I +D +   L I DTAGQ  F  +   Y R   G ++ Y +TD  SF+ +R + + I +   +D+   +LVGNK+D+ +  R V   +G ALA E+   FFETSA     +++VF ++ R+I+++
Sbjct:   53 TIEDAYKIR-IRIDDEPANLDILDTAGQAEFTAMRDQYMRAGEGFIICYSITDRRSFHEVREFKQLIYRVRRTDDTPVVLVGNKSDL-KQLRQVTKEEGLALAREFSCPFFETSAAYRYYIDDVFHALVREIRRK 185          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1A_RAT (Ras-related protein Rap-1A OS=Rattus norvegicus GN=Rap1a PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 46/128 (35.94%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +++V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1A_MOUSE (Ras-related protein Rap-1A OS=Mus musculus GN=Rap1a PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 46/128 (35.94%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +++V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1A_HUMAN (Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1A PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 46/128 (35.94%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +++V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAP1A_BOVIN (Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 46/128 (35.94%), Postives = 78/128 (60.94%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            + +E+D ++  L+I DTAG E+F  +   Y +   G  LVY +T +S+FN++++    I     +++V  ILVGNK D+ E +R V   +GQ LA ++    F E+SAK+ +NV E+F+ + R I ++
Sbjct:   42 KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL-EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC27_CHICK4.027e-1629.11DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]
RAB7B_MOUSE4.060e-1630.82Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RASK_MONDO5.303e-1636.51GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 ... [more]
RABL_MIMIV5.303e-1633.10Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
DJC27_RAT6.804e-1630.08DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]
RIT1_HUMAN6.926e-1636.30GTP-binding protein Rit1 OS=Homo sapiens GN=RIT1 P... [more]
RAP1A_RAT6.926e-1635.94Ras-related protein Rap-1A OS=Rattus norvegicus GN... [more]
RAP1A_MOUSE6.926e-1635.94Ras-related protein Rap-1A OS=Mus musculus GN=Rap1... [more]
RAP1A_HUMAN6.926e-1635.94Ras-related protein Rap-1A OS=Homo sapiens GN=RAP1... [more]
RAP1A_BOVIN6.926e-1635.94Ras-related protein Rap-1A OS=Bos taurus GN=RAP1A ... [more]

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Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
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