CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAS1_DROAN (Ras-like protein 1 OS=Drosophila ananassae GN=Ras85D PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 48/146 (32.88%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
            + + +DG+   L I DTAGQE +  +   Y R   G LLV+ V    SF +I  +   I++   ++ V  +LVGNK D+  +   V   + + +A +YGI + ETSAKT + V++ F+++ R+I++   D D++   +  K+N+P+
Sbjct:   42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL--ASWNVNNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRK---DKDNKGR-RGRKMNKPN 181          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RERG_MOUSE (Ras-related and estrogen-regulated growth inhibitor OS=Mus musculus GN=Rerg PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.318e-15
Identity = 56/144 (38.89%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  112 LDGKRIKLQIWDTAGQERFRTITT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFSIARDI-KQRLADTDSRAEPQTIKINQ 528
            +D + + ++I DTAGQE   TI    + R   G +LVYD+TD  SF  +   ++NI  E     NV  ILVGNKAD+D S R V T +G+ LA E    F+E SA T   N+ EVF+ + R++ ++R+    +R    T  + Q
Sbjct:   49 IDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEVKKPKNVTLILVGNKADLDHS-RQVSTEEGEKLATELACAFYECSACTGEGNITEVFYELCREVRRRRMVQGKTRRRSSTTHVKQ 188          

HSP 2 Score: 21.557 bits (44), Expect = 3.318e-15
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPLVLTSR 97
            +GVGKS +++RF    F   +   L  T R
Sbjct:   15 AGVGKSAIVVRFLTKRFIWEYDPTLESTYR 44          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RERG_HUMAN (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.318e-15
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 1
Query:  112 LDGKRIKLQIWDTAGQERFRTITT-AYYRGAMGILLVYDVTDESSFNNIRNWIRNI--EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNL-NVEEVFFSIARDI-KQRLADTDSRAEPQTIKINQ 528
            +D + + ++I DTAGQE   TI    + R   G +LVYD+TD  SF  +   ++NI  E     NV  ILVGNKAD+D S R V T +G+ LA E    F+E SA T   N+ E+F+ + R++ ++R+    +R    T  + Q
Sbjct:   49 IDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHS-RQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRRMVQGKTRRRSSTTHVKQ 188          

HSP 2 Score: 22.3274 bits (46), Expect = 3.318e-15
Identity = 12/30 (40.00%), Postives = 16/30 (53.33%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPLVLTSR 97
            +GVGKS L++RF    F   +   L  T R
Sbjct:   15 AGVGKSALVVRFLTKRFIWEYDPTLESTYR 44          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.322e-15
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  112 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNW------IRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK 471
            +D K   L I DTAGQE F  +   Y R   G LLV+ VTD SSF+ I  +      +++IE+        ILVGNK+D+ E++R V T++ Q L  +  + + E+SAK  +NV+  F  + R I+
Sbjct:   51 IDDKVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFP-----MILVGNKSDL-ENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFHDLVRAIR 170          

HSP 2 Score: 23.0978 bits (48), Expect = 3.322e-15
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 2
Query:    5 GSGVGKSCLLLRFSDGSFTTSF 70
            G GVGKS L ++F    F   +
Sbjct:   16 GGGVGKSALTIQFIQSHFVQDY 37          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 52/152 (34.21%), Postives = 79/152 (51.97%), Query Frame = 1
Query:   34 SAIL*WFLYYQF--YYTIGIDFKIRT-IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            SA+   F+ +QF  Y+   I+   +T + +D +   L I DTAGQ  F  +   Y RG  G ++ Y VTD  SF     +   I Q   +  +  +LVGNK D+ E  R V T +G  LA +Y   FFETSA     +++ F  + R+I+++
Sbjct:   34 SAVTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDL-EQFRQVSTEEGMTLARDYNCAFFETSAALRFGIDDAFQGLVREIRRK 184          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RIT2_HUMAN (GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = 1
Query:   34 SAIL*WFLYYQF--YYTIGIDFKIRT-IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            SA+   F+ +QF  Y+   I+   +T + +D +   L I DTAGQ  F  +   Y RG  G ++ Y VTD  SF     +   I Q   +  +  +LVGNK D+ E  R V T +G +LA EY   FFETSA     +++ F  + R+I+++
Sbjct:   34 SAMTMQFISHQFPDYHDPTIEDAYKTQVRIDNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDL-EQFRQVSTEEGLSLAQEYNCGFFETSAALRFCIDDAFHGLVREIRKK 184          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   58 YYQFYYTIGIDFKIRT-IELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA-SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR--LADTDSRAEPQTIK 519
            ++  YY   I+   R    +D +   L I DTAGQ+    +   + R   G +LVY VT  SSF+ I  +   I +   SD+V  +++GNK+D+D+ +R V   +G+ LA  +G+ F E SAKT  N+EEVF    R +K++  L + D   + + IK
Sbjct:   33 HFVHYYDPTIEDSYRKQCVIDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDD-ERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKRKYDLHNKDKSKDGKDIK 189          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 41/122 (33.61%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  112 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHAS-DNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
            +D +   L I DTAGQE +  +   + R   G +L+Y +T   +F  ++     I +    ++   +LVGNK D+++  R VPTS G+ LA +Y  +FFE SAK N+ +++ F  + R+I++
Sbjct:   54 IDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQD-RQVPTSAGRDLAKQYNCQFFEASAKQNVRIQDAFHGLVREIRR 174          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAS1_DROVI (Ras-like protein 1 OS=Drosophila virilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 48/146 (32.88%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
            + + +DG+   L I DTAGQE +  +   Y R   G LLV+ V    SF +I  +   I++   ++ V  +LVGNK D+  +   V   + + +A +YGI + ETSAKT + V++ F+++ R+I++   D D++   +  K N+P+
Sbjct:   42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDL--ASWNVQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRK---DKDNKGR-KGRKTNKPN 181          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAS1_DROGR (Ras-like protein 1 OS=Drosophila grimshawi GN=Ras85D PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  100 RTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 534
            + + +DG+   L I DTAGQE +  +   Y R   G LLV+ V    SF +I  +   I++   ++ V  +LVGNK D+      V   + + +A +YGI + ETSAKT + V++ F+++ R+I++   D D++   +  K N+P+
Sbjct:   42 KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWN--VQNEQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIRK---DKDNKGR-KGRKTNKPN 181          
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS1_DROAN2.632e-1532.88Ras-like protein 1 OS=Drosophila ananassae GN=Ras8... [more]
RERG_MOUSE3.318e-1538.89Ras-related and estrogen-regulated growth inhibito... [more]
RERG_HUMAN3.318e-1538.19Ras-related and estrogen-regulated growth inhibito... [more]
RAS2_HYDMA3.322e-1538.10Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RIT2_RAT3.437e-1534.21GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]
RIT2_HUMAN3.437e-1534.87GTP-binding protein Rit2 OS=Homo sapiens GN=RIT2 P... [more]
RASX_DICDI3.437e-1534.81Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RAS2_RHIRA3.437e-1533.61Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAS1_DROVI3.437e-1532.88Ras-like protein 1 OS=Drosophila virilis GN=Ras85D... [more]
RAS1_DROGR3.437e-1532.88Ras-like protein 1 OS=Drosophila grimshawi GN=Ras8... [more]

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Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
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