CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.472e-48
Identity = 83/138 (60.14%), Postives = 109/138 (78.99%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            TIG+DFKIRTIELDGK +KLQIWDTAGQERFRTIT++YYRGA GI +VYDVTD  SFNN++ W++ I+++A++ VNK+LVGNK+DM + K+ V  +  +  AD  GI F ETSAK   NVE+ F ++AR IK+R+  +
Sbjct:   40 TIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTD-KKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSS 176          

HSP 2 Score: 38.5058 bits (88), Expect = 2.472e-48
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.472e-48
Identity = 85/151 (56.29%), Postives = 116/151 (76.82%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  G+ F ETSAK   NVE+ F ++A +IK+R+     S  E   +KI+
Sbjct:   40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          

HSP 2 Score: 38.5058 bits (88), Expect = 2.472e-48
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.222e-48
Identity = 84/151 (55.63%), Postives = 116/151 (76.82%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRT+T++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  G+ F ETSAK   NVE+ F ++A +IK+R+     S  E   +KI+
Sbjct:   40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          

HSP 2 Score: 38.5058 bits (88), Expect = 3.222e-48
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.222e-48
Identity = 86/151 (56.95%), Postives = 115/151 (76.16%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
            TIG+DFKIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD  S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+     S  E   +KI+
Sbjct:   40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          

HSP 2 Score: 38.5058 bits (88), Expect = 3.222e-48
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.196e-48
Identity = 81/138 (58.70%), Postives = 111/138 (80.43%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 480
            F  TIGIDFKI+T++++GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DM+   R V   +G+ALA E GI F E+SAK + NV E+FF++A+ I++++
Sbjct:   49 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184          

HSP 2 Score: 36.1946 bits (82), Expect = 4.196e-48
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLL+RF +  F  SFIT +
Sbjct:   29 SGVGKSCLLVRFVEDKFNPSFITTI 53          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.212e-47
Identity = 87/152 (57.24%), Postives = 119/152 (78.29%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL---ADTDSRAEPQTIKI 522
            TIG+DFKIRTIE DGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYD T+  SFNN++ W+  I+++A+++V K+L+GNK DM ESK  V T  G+ALADE GI F ETSAK ++NVE+ F +IA +IK+++    + +  + P T+++
Sbjct:   40 TIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESK-VVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQM 190          

HSP 2 Score: 33.8834 bits (76), Expect = 1.212e-47
Identity = 14/25 (56.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            S VGKSCLLLRF+D ++  S+I+ +
Sbjct:   17 SSVGKSCLLLRFADDAYIDSYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 2.058e-47
Identity = 85/151 (56.29%), Postives = 116/151 (76.82%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQ 528
            TIG+DFKIRT+E++GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD  SFNN++ W+  I+++A+D+V K+LVGNK D+ E+ RAV TS  QA A E GI F ETSAK ++NVEE F +++  IK+  A + +  E +   + Q
Sbjct:   40 TIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAEN-RAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQ 189          

HSP 2 Score: 33.8834 bits (76), Expect = 2.058e-47
Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            S VGKSC LLRF+D S+  S+I+ +
Sbjct:   17 SSVGKSCFLLRFADDSYVDSYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.059e-47
Identity = 85/151 (56.29%), Postives = 115/151 (76.16%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
            TIG+DFKIRTIELDGK IKLQIWDTAGQER RTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+     S  E   +KI+
Sbjct:   40 TIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKID 189          

HSP 2 Score: 38.5058 bits (88), Expect = 2.059e-47
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.683e-47
Identity = 82/153 (53.59%), Postives = 115/153 (75.16%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD--SRAEPQTIKINQ 528
            TIG+DFKIRT EL+GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++A + VN++LVGNK+DM + K+ V  S  +  AD   I F ETSAK + NVE+ F +++R IK+R+ +    S     ++K+ Q
Sbjct:   40 TIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVD-KKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQ 191          

HSP 2 Score: 38.5058 bits (88), Expect = 2.683e-47
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.941e-47
Identity = 83/138 (60.14%), Postives = 109/138 (78.99%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 480
            F  TIG+DFKIRTIEL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ +F N+R W++ I++ A +NVNK+LVGNK+D+  +K+ V  +  +A AD   I F ETSAK + NVE+ F ++A +IK RL
Sbjct:   37 FISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDL-VAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRL 173          

HSP 2 Score: 38.1206 bits (87), Expect = 5.941e-47
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D +++ SFI+ +
Sbjct:   17 SGVGKSCLLLRFADDTYSESFISTI 41          
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR2.472e-4860.14GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1B_MOUSE2.472e-4856.29Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_RAT3.222e-4855.63Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_MACFA3.222e-4856.95Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
SEC4_YEAST4.196e-4858.70Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RABD1_ARATH1.212e-4757.24Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
YPTM1_MAIZE2.058e-4756.29GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1B_PIG2.059e-4756.29Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_SCHPO2.683e-4753.59GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1A_DICDI5.941e-4760.14Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
back to top