CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.743e-47
Identity = 84/151 (55.63%), Postives = 114/151 (75.50%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525
            TIG+DFKI+TIELDGK IKLQIWDTAGQERF TIT++YYRGA G L+VYDVTD+ S+ N++ W++ I++HAS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+++     S  E   +KI+
Sbjct:   40 TIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGERPNLKID 189          

HSP 2 Score: 37.7354 bits (86), Expect = 7.743e-47
Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D  +T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDPYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.315e-46
Identity = 82/133 (61.65%), Postives = 106/133 (79.70%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
            TIG+DFKIRTI LDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD  SFNN++ W++ I+++A D+V ++LVGNK D+ E K+ V TS  +  AD  GI F ETSAK++ NVE+ F  +A +IK+
Sbjct:   40 TIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIE-KKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKK 171          

HSP 2 Score: 38.5058 bits (88), Expect = 1.315e-46
Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF+D ++T S+I+ +
Sbjct:   17 SGVGKSCLLLRFADDTYTESYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 2.232e-46
Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            F  TIGIDFKIRTIE  GKRIKLQ+WDTAGQERFRTITTAYYRGAMGI+L+YDVTD  SF N+ NW + + QHA+++    LVGNK D DE  R V   +GQ LA +  + F E SAK+N NV+ +F+ +A  I+++
Sbjct:   43 FITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCD-DEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          

HSP 2 Score: 37.3502 bits (85), Expect = 2.232e-46
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRF +  F  SFIT +
Sbjct:   23 SGVGKSCLLLRFVEDKFNPSFITTI 47          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 85/146 (58.22%), Postives = 113/146 (77.40%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 504
            F  TI IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI+QHA+++V ++L+ NK DMD  KR VP  KG+ +A E+ I+FFETSAK N+N+E+ F ++  DI ++    +  +E
Sbjct:   38 FISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSE 182          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.185e-43
Identity = 74/136 (54.41%), Postives = 104/136 (76.47%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 483
            TIG+DFKI+T+ELDGK +KLQIWDTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+ ++
Sbjct:   40 TIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174          

HSP 2 Score: 38.5058 bits (88), Expect = 2.185e-43
Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSCLLLRFSD ++T  +I+ +
Sbjct:   17 SGVGKSCLLLRFSDDTYTNDYISTI 41          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.836e-43
Identity = 76/133 (57.14%), Postives = 102/133 (76.69%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
            TIG+DF IRTIELDGK+IKLQIWDTAGQERF+TITT+YYRGA G+++VYD+T   SFN+I+ W+ ++++ AS +V K++VGNK D++ SKRAV     +  ADE  I   ETSAK +  ++E F  +A DIK+
Sbjct:   65 TIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLN-SKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196          

HSP 2 Score: 38.5058 bits (88), Expect = 4.836e-43
Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SGVGKSC+LLRF+D  FT S+I+ +
Sbjct:   42 SGVGKSCMLLRFADNRFTDSYISTI 66          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.068e-42
Identity = 80/155 (51.61%), Postives = 114/155 (73.55%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA---DTDSRAEPQTIKI 522
            F  T+GIDFK++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN++++W   I+ ++ +N   +LVGNK DMD S+R V   +G+ LAD+ G++FFETSAK N+NV+ VF  +   I  ++A   D D + +P+  K+
Sbjct:   51 FVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMD-SERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDPQQQPKGQKL 204          

HSP 2 Score: 28.4906 bits (62), Expect = 1.068e-42
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFIT 76
            S VGK+  L R+ D SFT++F++
Sbjct:   31 SSVGKTSFLFRYCDDSFTSAFVS 53          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.231e-42
Identity = 76/141 (53.90%), Postives = 108/141 (76.60%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YDVT+E SFN++++W+  I+ ++ DN   ILVGNK DM E +R +   +G+ LAD+ G++FFETSAK N+NV+ VF  +   I  +++++
Sbjct:   50 FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDM-EDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSES 189          

HSP 2 Score: 29.261 bits (64), Expect = 5.231e-42
Identity = 11/23 (47.83%), Postives = 18/23 (78.26%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFIT 76
            S VGK+  L R++D SFT++F++
Sbjct:   30 SSVGKTSFLFRYADDSFTSAFVS 52          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 1.157e-41
Identity = 77/141 (54.61%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KGQ LA++ G  FFE SAK N++V + F  +   I  +++D+
Sbjct:   51 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190          

HSP 2 Score: 27.335 bits (59), Expect = 1.157e-41
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFIT 76
            S VGK+  L R++D +FT +F++
Sbjct:   31 SSVGKTSFLFRYADDTFTPAFVS 53          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.157e-41
Identity = 77/141 (54.61%), Postives = 105/141 (74.47%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  +++DT
Sbjct:   51 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDT 190          

HSP 2 Score: 27.335 bits (59), Expect = 1.157e-41
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFIT 76
            S VGK+  L R++D +FT +F++
Sbjct:   31 SSVGKTSFLFRYADDTFTPAFVS 53          
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1C_HUMAN7.743e-4755.63Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1B_DICDI1.315e-4661.65Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
SEC4_CANAL2.232e-4659.85Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB10_RAT7.101e-4558.22Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
YPT1_YEAST2.185e-4354.41GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1C_DICDI4.836e-4357.14Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB3_CAEEL1.068e-4251.61Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3_DROME5.231e-4253.90Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB3B_HUMAN1.157e-4154.61Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3... [more]
RAB3B_BOVIN1.157e-4154.61Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]

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Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
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