CX296319
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 7.743e-47 Identity = 84/151 (55.63%), Postives = 114/151 (75.50%), Query Frame = 1 Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 525 TIG+DFKI+TIELDGK IKLQIWDTAGQERF TIT++YYRGA G L+VYDVTD+ S+ N++ W++ I++HAS+NVNK+LVGNK+D+ +K+ V + + AD GI F ETSAK NVE+ F ++A +IK+++ S E +KI+ Sbjct: 40 TIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGERPNLKID 189 HSP 2 Score: 37.7354 bits (86), Expect = 7.743e-47 Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82 SGVGKSCLLLRF+D +T S+I+ + Sbjct: 17 SGVGKSCLLLRFADDPYTESYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 1.315e-46 Identity = 82/133 (61.65%), Postives = 106/133 (79.70%), Query Frame = 1 Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474 TIG+DFKIRTI LDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD SFNN++ W++ I+++A D+V ++LVGNK D+ E K+ V TS + AD GI F ETSAK++ NVE+ F +A +IK+ Sbjct: 40 TIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIE-KKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKK 171 HSP 2 Score: 38.5058 bits (88), Expect = 1.315e-46 Identity = 16/25 (64.00%), Postives = 22/25 (88.00%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82 SGVGKSCLLLRF+D ++T S+I+ + Sbjct: 17 SGVGKSCLLLRFADDTYTESYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 2.232e-46 Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 1 Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 477 F TIGIDFKIRTIE GKRIKLQ+WDTAGQERFRTITTAYYRGAMGI+L+YDVTD SF N+ NW + + QHA+++ LVGNK D DE R V +GQ LA + + F E SAK+N NV+ +F+ +A I+++ Sbjct: 43 FITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCD-DEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178 HSP 2 Score: 37.3502 bits (85), Expect = 2.232e-46 Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82 SGVGKSCLLLRF + F SFIT + Sbjct: 23 SGVGKSCLLLRFVEDKFNPSFITTI 47
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45 Identity = 85/146 (58.22%), Postives = 113/146 (77.40%), Query Frame = 1 Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 504 F TI IDFKI+T+EL GK+IKLQIWDTAGQERF TITT+YYRGAMGI+LVYD+T+ SF NI W+RNI+QHA+++V ++L+ NK DMD KR VP KG+ +A E+ I+FFETSAK N+N+E+ F ++ DI ++ + +E Sbjct: 38 FISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSE 182
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 2.185e-43 Identity = 74/136 (54.41%), Postives = 104/136 (76.47%), Query Frame = 1 Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 483 TIG+DFKI+T+ELDGK +KLQIWDTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+ V K+LVGNK D+ + KR V + AD + F ETSA + NVE+ F ++AR IK+ ++ Sbjct: 40 TIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174 HSP 2 Score: 38.5058 bits (88), Expect = 2.185e-43 Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82 SGVGKSCLLLRFSD ++T +I+ + Sbjct: 17 SGVGKSCLLLRFSDDTYTNDYISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 4.836e-43 Identity = 76/133 (57.14%), Postives = 102/133 (76.69%), Query Frame = 1 Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474 TIG+DF IRTIELDGK+IKLQIWDTAGQERF+TITT+YYRGA G+++VYD+T SFN+I+ W+ ++++ AS +V K++VGNK D++ SKRAV + ADE I ETSAK + ++E F +A DIK+ Sbjct: 65 TIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLN-SKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196 HSP 2 Score: 38.5058 bits (88), Expect = 4.836e-43 Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82 SGVGKSC+LLRF+D FT S+I+ + Sbjct: 42 SGVGKSCMLLRFADNRFTDSYISTI 66
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.068e-42 Identity = 80/155 (51.61%), Postives = 114/155 (73.55%), Query Frame = 1 Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA---DTDSRAEPQTIKI 522 F T+GIDFK++T+ KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN++++W I+ ++ +N +LVGNK DMD S+R V +G+ LAD+ G++FFETSAK N+NV+ VF + I ++A D D + +P+ K+ Sbjct: 51 FVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMD-SERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDPQQQPKGQKL 204 HSP 2 Score: 28.4906 bits (62), Expect = 1.068e-42 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76 S VGK+ L R+ D SFT++F++ Sbjct: 31 SSVGKTSFLFRYCDDSFTSAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 5.231e-42 Identity = 76/141 (53.90%), Postives = 108/141 (76.60%), Query Frame = 1 Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489 F T+GIDFK++T+ KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YDVT+E SFN++++W+ I+ ++ DN ILVGNK DM E +R + +G+ LAD+ G++FFETSAK N+NV+ VF + I +++++ Sbjct: 50 FVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDM-EDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDIICDKMSES 189 HSP 2 Score: 29.261 bits (64), Expect = 5.231e-42 Identity = 11/23 (47.83%), Postives = 18/23 (78.26%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76 S VGK+ L R++D SFT++F++ Sbjct: 30 SSVGKTSFLFRYADDSFTSAFVS 52
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3B_HUMAN (Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2) HSP 1 Score: 164.081 bits (414), Expect = 1.157e-41 Identity = 77/141 (54.61%), Postives = 105/141 (74.47%), Query Frame = 1 Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489 F T+GIDFK++T+ KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN ILVGNK DM+E +R VPT KGQ LA++ G FFE SAK N++V + F + I +++D+ Sbjct: 51 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190 HSP 2 Score: 27.335 bits (59), Expect = 1.157e-41 Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76 S VGK+ L R++D +FT +F++ Sbjct: 31 SSVGKTSFLFRYADDTFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 1.157e-41 Identity = 77/141 (54.61%), Postives = 105/141 (74.47%), Query Frame = 1 Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489 F T+GIDFK++T+ KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN ILVGNK DM+E +R VPT KG+ LA++ G FFE SAK N++V + F + I +++DT Sbjct: 51 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDT 190 HSP 2 Score: 27.335 bits (59), Expect = 1.157e-41 Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2 Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76 S VGK+ L R++D +FT +F++ Sbjct: 31 SSVGKTSFLFRYADDTFTPAFVS 53 The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bpback to top |