CX296319
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.508e-41 Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 507
F T+GIDFK++TI + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM E +R V + +G+ LAD G +FFE SAK N+NV++ F + I ++++++ A+P
Sbjct: 51 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196 HSP 2 Score: 28.4906 bits (62), Expect = 1.508e-41 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D SFT +F++
Sbjct: 31 SSVGKTSFLFRYADDSFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.508e-41 Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 507
F T+GIDFK++TI + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM E +R V + +G+ LAD G +FFE SAK N+NV++ F + I ++++++ A+P
Sbjct: 51 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196 HSP 2 Score: 28.4906 bits (62), Expect = 1.508e-41 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D SFT +F++
Sbjct: 31 SSVGKTSFLFRYADDSFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.508e-41 Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 507
F T+GIDFK++TI + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM E +R V + +G+ LAD G +FFE SAK N+NV++ F + I ++++++ A+P
Sbjct: 51 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196 HSP 2 Score: 28.4906 bits (62), Expect = 1.508e-41 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D SFT +F++
Sbjct: 31 SSVGKTSFLFRYADDSFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.508e-41 Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 507
F T+GIDFK++TI + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM E +R V + +G+ LAD G +FFE SAK N+NV++ F + I ++++++ A+P
Sbjct: 51 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196 HSP 2 Score: 28.4906 bits (62), Expect = 1.508e-41 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D SFT +F++
Sbjct: 31 SSVGKTSFLFRYADDSFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.508e-41 Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 507
F T+GIDFK++TI + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM E +R V + +G+ LAD G +FFE SAK N+NV++ F + I ++++++ A+P
Sbjct: 51 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196 HSP 2 Score: 28.4906 bits (62), Expect = 1.508e-41 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D SFT +F++
Sbjct: 31 SSVGKTSFLFRYADDSFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3) HSP 1 Score: 162.54 bits (410), Expect = 1.508e-41 Identity = 77/147 (52.38%), Postives = 109/147 (74.15%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 507
F T+GIDFK++TI + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN +LVGNK DM E +R V + +G+ LAD G +FFE SAK N+NV++ F + I ++++++ A+P
Sbjct: 51 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADP 196 HSP 2 Score: 28.4906 bits (62), Expect = 1.508e-41 Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D SFT +F++
Sbjct: 31 SSVGKTSFLFRYADDSFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 3.336e-41 Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
F T+GIDFK++T+ KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN ILVGNK DM+E +R VPT KG+ LA++ G FFE SAK N++V + F + I +++D+
Sbjct: 51 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190 HSP 2 Score: 27.335 bits (59), Expect = 3.336e-41 Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D +FT +F++
Sbjct: 31 SSVGKTSFLFRYADDTFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 3.336e-41 Identity = 76/141 (53.90%), Postives = 105/141 (74.47%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
F T+GIDFK++T+ KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN ILVGNK DM+E +R VPT KG+ LA++ G FFE SAK N++V + F + I +++D+
Sbjct: 51 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190 HSP 2 Score: 27.335 bits (59), Expect = 3.336e-41 Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D +FT +F++
Sbjct: 31 SSVGKTSFLFRYADDTFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 4.347e-41 Identity = 75/141 (53.19%), Postives = 105/141 (74.47%), Query Frame = 1
Query: 67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
F T+GIDFK++T+ KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W I+ ++ DN ILVGNK DM+E +R +PT KG+ LA++ G FFE SAK N++V + F + I +++D+
Sbjct: 51 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190 HSP 2 Score: 27.335 bits (59), Expect = 4.347e-41 Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFIT 76
S VGK+ L R++D +FT +F++
Sbjct: 31 SSVGKTSFLFRYADDTFTPAFVS 53
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 9.591e-41 Identity = 76/153 (49.67%), Postives = 112/153 (73.20%), Query Frame = 1
Query: 52 FLYYQFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 510
FL F T+GIDF+ + +++DG ++KLQIWDTAGQERFR++T AYYR A +LL+YDVT+++SF++I+ W+ I++HA D+V +L+GNK D +RAV + LA +YG+ F ETSAKT LNV+ F +IA+++KQR T + +EP+
Sbjct: 88 FLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVD-SAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQR--HTKAPSEPR 237 HSP 2 Score: 33.113 bits (74), Expect = 9.591e-41 Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSF 58
SGVGK+CLL+RF DG+F
Sbjct: 72 SGVGKTCLLVRFKDGAF 88 The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bpback to top |