CX296319
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Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3) HSP 1 Score: 158.688 bits (400), Expect = 1.253e-40 Identity = 76/142 (53.52%), Postives = 106/142 (74.65%), Query Frame = 1
Query: 52 FLYYQFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 477
FL F T+GIDF+ + + +DG R+KLQIWDTAGQERFR++T AYYR A +LL+YD+T++SSF+NIR W+ I ++A +V +L+GNKADM S+R + + G+ LA EYG+ F ETSAKT +NVE F +IA+++K R
Sbjct: 54 FLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADM-SSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYR 194 HSP 2 Score: 29.261 bits (64), Expect = 1.253e-40 Identity = 10/17 (58.82%), Postives = 15/17 (88.24%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSF 58
+GVGK+C L++F DG+F
Sbjct: 38 TGVGKTCFLIQFKDGAF 54
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.634e-40 Identity = 71/133 (53.38%), Postives = 101/133 (75.94%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
TIG+DFK++TIE+DG ++++QIWDTAGQER++TIT YYR A GI LVYD++ E S+ +I W+ +++++A + V KIL+GNKAD +E KR V +GQ LA EYG+ F+ETSA TNLN++E F + + Q
Sbjct: 40 TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171 HSP 2 Score: 33.113 bits (74), Expect = 1.634e-40 Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGK+CLL RF+D F +S I+ +
Sbjct: 17 SGVGKTCLLCRFTDNEFHSSHISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 1.634e-40 Identity = 71/133 (53.38%), Postives = 101/133 (75.94%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
TIG+DFK++TIE+DG ++++QIWDTAGQER++TIT YYR A GI LVYD++ E S+ +I W+ +++++A + V KIL+GNKAD +E KR V +GQ LA EYG+ F+ETSA TNLN++E F + + Q
Sbjct: 40 TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171 HSP 2 Score: 33.113 bits (74), Expect = 1.634e-40 Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGK+CLL RF+D F +S I+ +
Sbjct: 17 SGVGKTCLLCRFTDNEFHSSHISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 2.129e-40 Identity = 71/133 (53.38%), Postives = 101/133 (75.94%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
TIG+DFK++TIE+DG ++++QIWDTAGQER++TIT YYR A GI LVYD++ E S+ +I W+ +++++A + V KIL+GNKAD +E KR V +GQ LA EYG+ F+ETSA TNLN++E F + + Q
Sbjct: 40 TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVLQ 171 HSP 2 Score: 33.113 bits (74), Expect = 2.129e-40 Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGK+CLL RF+D F +S I+ +
Sbjct: 17 SGVGKTCLLCRFTDNEFHSSHISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.131e-40 Identity = 77/155 (49.68%), Postives = 105/155 (67.74%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA----RDIKQRLADTDSRAEPQTIKINQ 528
TIG+DFKIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG G+++VYDVT SF N++ W+ I Q+ D+V +ILVGNK D D ++ V T A + GI+ FETSAK N+NVEE+F I R K LA + + +K+ +
Sbjct: 40 TIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTK 192 HSP 2 Score: 35.8094 bits (81), Expect = 2.131e-40 Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKS LLLRF+D +F+ S+IT +
Sbjct: 17 SGVGKSSLLLRFADNTFSGSYITTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.131e-40 Identity = 77/155 (49.68%), Postives = 105/155 (67.74%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA----RDIKQRLADTDSRAEPQTIKINQ 528
TIG+DFKIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG G+++VYDVT SF N++ W+ I Q+ D+V +ILVGNK D D ++ V T A + GI+ FETSAK N+NVEE+F I R K LA + + +K+ +
Sbjct: 40 TIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTK 192 HSP 2 Score: 35.8094 bits (81), Expect = 2.131e-40 Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKS LLLRF+D +F+ S+IT +
Sbjct: 17 SGVGKSSLLLRFADNTFSGSYITTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1) HSP 1 Score: 151.369 bits (381), Expect = 2.131e-40 Identity = 77/155 (49.68%), Postives = 105/155 (67.74%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA----RDIKQRLADTDSRAEPQTIKINQ 528
TIG+DFKIRT+E++G+++KLQIWDTAGQERFRTIT+ YYRG G+++VYDVT SF N++ W+ I Q+ D+V +ILVGNK D D ++ V T A + GI+ FETSAK N+NVEE+F I R K LA + + +K+ +
Sbjct: 40 TIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTK 192 HSP 2 Score: 35.8094 bits (81), Expect = 2.131e-40 Identity = 16/25 (64.00%), Postives = 21/25 (84.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGKS LLLRF+D +F+ S+IT +
Sbjct: 17 SGVGKSSLLLRFADNTFSGSYITTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 3.614e-40 Identity = 70/133 (52.63%), Postives = 101/133 (75.94%), Query Frame = 1
Query: 76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 474
TIG+DFK++TI++DG ++++QIWDTAGQER++TIT YYR A GI LVYD++ E S+ +I W+ +++++A + V KIL+GNKAD +E KR V +GQ LA EYG+ F+ETSA TNLN++E F + + Q
Sbjct: 40 TIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171 HSP 2 Score: 33.113 bits (74), Expect = 3.614e-40 Identity = 14/25 (56.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSFTTSFITPL 82
SGVGK+CLL RF+D F +S I+ +
Sbjct: 17 SGVGKTCLLCRFTDNEFHSSHISTI 41
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 6.113e-40 Identity = 73/148 (49.32%), Postives = 106/148 (71.62%), Query Frame = 1
Query: 52 FLYYQFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 495
FL F T+GIDF+ + +++DG ++KLQIWDTAGQERFR++T AYYR A +LL+YD+T++ SF+NI+ W+ I+++A +V +L+GNK D + R V G+ LA EYG+ F ETSA+T LNV+ F +IA+++KQR A S
Sbjct: 92 FLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQD-RVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238 HSP 2 Score: 33.113 bits (74), Expect = 6.113e-40 Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSF 58
SGVGK+CLL+RF DG+F
Sbjct: 76 SGVGKTCLLVRFKDGAF 92
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 6.114e-40 Identity = 74/153 (48.37%), Postives = 111/153 (72.55%), Query Frame = 1
Query: 52 FLYYQFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 510
FL F T+GIDF+ + +++DG ++KLQIWDTAGQERFR++T AYYR A +LL+YD+T++ SF+NI+ W+ I+++A +V +L+GNK D + +R V G+ LA EYG+ F ETSAK+ LNV+ F +IA+++KQR T + +EP+
Sbjct: 89 FLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQ-ERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQR--STKAPSEPR 238 HSP 2 Score: 33.113 bits (74), Expect = 6.114e-40 Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 2
Query: 8 SGVGKSCLLLRFSDGSF 58
SGVGK+CLL+RF DG+F
Sbjct: 73 SGVGKTCLLVRFKDGAF 89 The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bpback to top |