CX296319

Overview
NameCX296319
Unique NameCX296319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length718
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.356e-39
Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 447
            F  T+GIDFK++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILVGNK D+ E +R VP   G+ LAD+ G +FFE SAK N+NV++VF
Sbjct:   51 FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176          

HSP 2 Score: 28.4906 bits (62), Expect = 1.356e-39
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFIT 76
            S VGK+  L R++D SFT +F++
Sbjct:   31 SSVGKTSFLFRYADDSFTPAFVS 53          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.356e-39
Identity = 74/151 (49.01%), Postives = 111/151 (73.51%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 525
            TIG+DFKI+T+++D   IKLQIWDTAGQERFRTIT+ YYRGA GI+ VYDVT++ SF++I   W+++I+++A+ NV K+L+GNK D+ ES R V   + + +A++  + + E SAKT+ NVE+ F +IA+ +K ++    S A   T+ +N
Sbjct:   39 TIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAES-RVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPASTVSLN 188          

HSP 2 Score: 30.8018 bits (68), Expect = 1.356e-39
Identity = 12/25 (48.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFITPL 82
            SG GKS LLLRF+D +++ S+++ +
Sbjct:   16 SGTGKSSLLLRFADNTYSESYMSTI 40          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.767e-39
Identity = 74/141 (52.48%), Postives = 103/141 (73.05%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILVGNK D+ E +R VP   G+ LAD+ G +FFE SAK N+NV++VF  +   I +++ ++
Sbjct:   51 FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNES 190          

HSP 2 Score: 28.4906 bits (62), Expect = 1.767e-39
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSFTTSFIT 76
            S VGK+  L R++D SFT +F++
Sbjct:   31 SSVGKTSFLFRYADDSFTPAFVS 53          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 2.991e-39
Identity = 72/142 (50.70%), Postives = 104/142 (73.24%), Query Frame = 1
Query:   52 FLYYQFYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 477
            FL   F  T+GIDF+ + +++DG ++KLQ+WDTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK D    +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++KQR
Sbjct:   88 FLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQR 228          

HSP 2 Score: 33.113 bits (74), Expect = 2.991e-39
Identity = 13/17 (76.47%), Postives = 16/17 (94.12%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSF 58
            SGVGK+CLL+RF DG+F
Sbjct:   72 SGVGKTCLLVRFKDGAF 88          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.001e-39
Identity = 77/151 (50.99%), Postives = 107/151 (70.86%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ E++R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I Q++ D   D   E   IKI
Sbjct:   38 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-EARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKI 187          

HSP 2 Score: 29.261 bits (64), Expect = 3.001e-39
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 8.643e-39
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 522
            TIG++F  R + +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++     D   E   IKI
Sbjct:   38 TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKI 187          

HSP 2 Score: 29.261 bits (64), Expect = 8.643e-39
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 75/141 (53.19%), Postives = 106/141 (75.18%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM E +R + T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++++
Sbjct:   59 FVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES 198          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 9.932e-39
Identity = 75/141 (53.19%), Postives = 106/141 (75.18%), Query Frame = 1
Query:   67 FYYTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 489
            F  T+GIDFK++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM E +R + T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++++
Sbjct:   59 FVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES 198          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.126e-38
Identity = 71/137 (51.82%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 486
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G+  A E+G+ F ETSA+T  NVEE F + A++I +++ D
Sbjct:   38 TIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTH-RRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQD 173          

HSP 2 Score: 29.261 bits (64), Expect = 1.126e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31          
BLAST of CX296319 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.126e-38
Identity = 71/137 (51.82%), Postives = 101/137 (73.72%), Query Frame = 1
Query:   76 TIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 486
            TIG++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G+  A E+G+ F ETSA+T  NVEE F + A++I +++ D
Sbjct:   38 TIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTH-RRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQD 173          

HSP 2 Score: 29.261 bits (64), Expect = 1.126e-38
Identity = 12/17 (70.59%), Postives = 15/17 (88.24%), Query Frame = 2
Query:    8 SGVGKSCLLLRFSDGSF 58
            +GVGKSCLLL+F+D  F
Sbjct:   15 TGVGKSCLLLQFTDKRF 31          
The following BLAST results are available for this feature:
BLAST of CX296319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3D_MOUSE1.356e-3957.48Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB1_THEPA1.356e-3949.01Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB3D_HUMAN1.767e-3952.48Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB26_HUMAN2.991e-3950.70Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAB2_LYMST3.001e-3950.99Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_HUMAN8.643e-3950.33Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB3C_HUMAN9.932e-3953.19Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN9.932e-3953.19Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
YPTV4_VOLCA1.126e-3851.82GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.126e-3851.82GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05138G08SK FerrChloL1 Citrus clementina cDNA clone C05138G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296319 ID=CX296319; Name=CX296319; organism=Citrus clementina; type=EST; length=718bp
ACGAGGCAGCGGTGTTGGTAAGAGTTGTCTCCTTCTGCGATTCTCTGATG
GTTCCTTTACTACCAGTTTTATTACACCATTGGTATTGACTTCAAGATTA
GGACCATAGAGCTTGATGGAAAACGAATTAAACTTCAAATATGGGATACT
GCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCATACTACCGAGGAGC
CATGGGAATATTGCTCGTATATGATGTCACCGACGAGTCATCTTTCAACA
ACATTAGGAATTGGATCCGTAATATCGAACAGCATGCATCTGACAATGTA
AACAAGATTCTGGTGGGTAACAAGGCCGACATGGATGAAAGCAAAAGGGC
TGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAATATGGCATCAAGT
TCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGAGGAGGTTTTCTTT
TCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATACAGACTCTAGGGC
TGAGCCTCAGACTATCAAAATTAACCAACCTGACCAGGCAGGTGGGGCTG
CTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTAAGCAATCTATGCG
GGTGAGATCACATGGGTATATGTCAAGGCAATCATTTTGGTTGGGACAAC
TAATTTTGTCAACTATATCATTGGGGCTTGTATTGGTCTATCATTATTTT
ACACTACCACACGCTTGC
back to top