CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27 Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ QAI EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N A ++I+ N+P GAKG YW+S YI ++MGP+I ++I + D KL Sbjct: 138 PSPKGGTVTFDLEQAINEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDLKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27 Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPK GTVTT++ AI EFK GK+E+RAD++GIVH+ FGKA FS DDLL N + ++++ NKP GAKG YWKS YI S+MGPS+ ++ + D Sbjct: 137 PNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVDRNKPSGAKGRYWKSLYITSTMGPSVEVDFSALQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27 Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVTT++ AI EFK GK+E+RAD+TGIVH+ FGKA FSE +LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I + D Sbjct: 137 PNPKAGTVTTDLAAAINEFKAGKLEFRADRTGIVHVRFGKASFSEGNLLDNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIAALQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27 Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPKAGTVT++I AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L N +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I + DY+ Sbjct: 137 PNPKAGTVTSDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINALQDYQ 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27 Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPKAGTVTT++ +I+EFK GK+E+RAD+ GIVH+ FGKA FS +DLL N ++I+ NKP GAKG YWKS YI S+MGPS+ ++I + D K Sbjct: 137 PNPKAGTVTTDLISSIKEFKAGKLEFRADRAGIVHVRFGKASFSPEDLLENLKVLHEAIDRNKPSGAKGRYWKSLYITSTMGPSVEIDIAALQDSK 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27 Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVT ++ QA+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N A ++I+ N+P GAKG YW+S YI ++MGP+I ++I + D KL Sbjct: 138 PSPKGGTVTFDLEQAVNEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDPKL 234
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27 Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP GAKG YWK+ Y+ S+MGPS++L+I + DY+ Sbjct: 137 PNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQLDINAVQDYQ 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27 Identity = 53/91 (58.24%), Postives = 72/91 (79.12%), Query Frame = -3 Query: 271 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 543 P+PK+GTVTTN+ +AI+ F++G++EYR DKTGIVH+ FG+ DF+E L N +A +S+E NKP GA G+YWKS I +SM PSIRLNI++ Sbjct: 132 PSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGIVHLAFGRMDFNEQHLYDNLVAIKESVETNKPSGASGLYWKSFAIATSMSPSIRLNIQQ 222
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27 Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP GAKG YWKS Y+ S+MGPS++++I + DY+ Sbjct: 137 PNPKAGTVTNDIGNAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFENLKTLQESIDKNKPSGAKGKYWKSFYVTSTMGPSVQVDINAVQDYQ 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26 Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVTT++ AI+EFK GK+E+RAD+TGIVH+ FGKA FS D LL N ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++ + D Sbjct: 137 PNPKAGTVTTDLEAAIKEFKAGKLEFRADRTGIVHVRFGKASFSADALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |