CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNE7 (50S ribosomal protein L1 OS=Synechococcus elongatus (strain PCC 7942) GN=rplA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 56/97 (57.73%), Postives = 74/97 (76.29%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++ QAI EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N  A  ++I+ N+P GAKG YW+S YI ++MGP+I ++I  + D KL
Sbjct:  138 PSPKGGTVTFDLEQAINEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDLKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPK GTVTT++  AI EFK GK+E+RAD++GIVH+ FGKA FS DDLL N  +  ++++ NKP GAKG YWKS YI S+MGPS+ ++   + D
Sbjct:  137 PNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVDRNKPSGAKGRYWKSLYITSTMGPSVEVDFSALQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNPW (50S ribosomal protein L1 OS=Synechococcus sp. (strain WH7803) GN=rplA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVTT++  AI EFK GK+E+RAD+TGIVH+ FGKA FSE +LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++I  + D
Sbjct:  137 PNPKAGTVTTDLAAAINEFKAGKLEFRADRTGIVHVRFGKASFSEGNLLDNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDIAALQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM5 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.857e-27
Identity = 55/96 (57.29%), Postives = 74/96 (77.08%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPKAGTVT++I  AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I  + DY+
Sbjct:  137 PNPKAGTVTSDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINALQDYQ 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMA (50S ribosomal protein L1 OS=Prochlorococcus marinus GN=rplA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.037e-27
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPKAGTVTT++  +I+EFK GK+E+RAD+ GIVH+ FGKA FS +DLL N     ++I+ NKP GAKG YWKS YI S+MGPS+ ++I  + D K
Sbjct:  137 PNPKAGTVTTDLISSIKEFKAGKLEFRADRAGIVHVRFGKASFSPEDLLENLKVLHEAIDRNKPSGAKGRYWKSLYITSTMGPSVEIDIAALQDSK 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNP6 (50S ribosomal protein L1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 55/97 (56.70%), Postives = 74/97 (76.29%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVT ++ QA+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N  A  ++I+ N+P GAKG YW+S YI ++MGP+I ++I  + D KL
Sbjct:  138 PSPKGGTVTFDLEQAVNEFKAGKLEFRADRTGIVHVLFGKASFSADDLLANLKALQETIDRNRPSGAKGRYWRSVYISATMGPAIEVDINALRDPKL 234          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMS (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain AS9601) GN=rplA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++L+I  + DY+
Sbjct:  137 PNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQLDINAVQDYQ 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_CYAME (50S ribosomal protein L1, chloroplastic OS=Cyanidioschyzon merolae GN=rpl1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 53/91 (58.24%), Postives = 72/91 (79.12%), Query Frame = -3
Query:  271 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKE 543
            P+PK+GTVTTN+ +AI+ F++G++EYR DKTGIVH+ FG+ DF+E  L  N +A  +S+E NKP GA G+YWKS  I +SM PSIRLNI++
Sbjct:  132 PSPKSGTVTTNVAEAIQAFRRGQIEYRTDKTGIVHLAFGRMDFNEQHLYDNLVAIKESVETNKPSGASGLYWKSFAIATSMSPSIRLNIQQ 222          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM2 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.591e-27
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWKS Y+ S+MGPS++++I  + DY+
Sbjct:  137 PNPKAGTVTNDIGNAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFENLKTLQESIDKNKPSGAKGKYWKSFYVTSTMGPSVQVDINAVQDYQ 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_SYNSC (50S ribosomal protein L1 OS=Synechococcus sp. (strain CC9605) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVTT++  AI+EFK GK+E+RAD+TGIVH+ FGKA FS D LL N     ++I+ NKP GAKG YWKS Y+ S+MGPS+ ++   + D
Sbjct:  137 PNPKAGTVTTDLEAAIKEFKAGKLEFRADRTGIVHVRFGKASFSADALLQNLKTLQETIDRNKPSGAKGRYWKSLYVTSTMGPSVEVDFSALQD 230          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_SYNE72.953e-2757.7350S ribosomal protein L1 OS=Synechococcus elongatu... [more]
RL1_SYNR33.857e-2757.4550S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_SYNPW3.857e-2759.5750S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROM53.857e-2757.2950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMA5.037e-2758.3350S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNP66.578e-2756.7050S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_PROMS6.578e-2757.2950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RK1_CYAME6.578e-2758.2450S ribosomal protein L1, chloroplastic OS=Cyanidi... [more]
RL1_PROM28.591e-2757.2950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_SYNSC1.122e-2658.5150S ribosomal protein L1 OS=Synechococcus sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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