CX296321

Overview
NameCX296321
Unique NameCX296321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVTT++  AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N      +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D
Sbjct:  137 PNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26
Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L  N     +SI+ NKP GAKG YW+S Y+ S+MGPS++++I  + DY+
Sbjct:  137 PNPKAGTVTGDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWRSFYLTSTMGPSVQVDINALQDYQ 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVTT++  AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N      +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D
Sbjct:  137 PNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP G+KG YWKS Y+ S+MGPS++++I  + DY+
Sbjct:  137 PNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGSKGKYWKSFYVTSTMGPSVQVDISAVQDYQ 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = -3
Query:  256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543
            PNPKAGTVT +I  AI+EFK GK+E+RADK GIVH+ FGKA F+++ L  N     +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I  + DY+
Sbjct:  137 PNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINAVQDYQ 232          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 51/97 (52.58%), Postives = 76/97 (78.35%), Query Frame = -3
Query:  253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543
            P+PK GTVTT++  AI+EFK GK E+RAD+TGIVH+ FGKA F+ +DLL+N  A  ++I+ N+P GAKG YW++ ++ +SMGPSI++++  + D K+
Sbjct:  139 PSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGIVHVMFGKASFTAEDLLVNLKALQETIDRNRPSGAKGRYWRTVFVSASMGPSIQVDVNSLRDLKV 235          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_THAPS (50S ribosomal protein L1, chloroplastic OS=Thalassiosira pseudonana GN=rpl1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 51/89 (57.30%), Postives = 73/89 (82.02%), Query Frame = -3
Query:  277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543
            P+PK+GTV+TN+ + + +FKKGK EY+ADKTG+VH+ FGKA+FS+D L+ N  +  +SIE N+P G KG Y+KS +IC+SMGPSI+L++
Sbjct:  138 PSPKSGTVSTNLTETLSDFKKGKFEYKADKTGVVHVNFGKANFSKDQLMENLTSLYQSIEQNRPSGVKGKYFKSLFICTSMGPSIQLDL 226          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26
Identity = 52/93 (55.91%), Postives = 73/93 (78.49%), Query Frame = -3
Query:  265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543
            P+PKAGTVT +I ++I EFK GKVEYR D+TGI+H+PFGK+ F E+DL++N      SI+ NKP G+KG YWK+ ++ S+MGPSI+++I  +L
Sbjct:  137 PSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDSIDKNKPSGSKGKYWKTFFLSSTMGPSIQIDITSLL 229          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVTT++  AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N     ++I+ NKP GAKG YWKS YI S+MGPS+ +++  + D
Sbjct:  137 PNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230          
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = -3
Query:  262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543
            PNPKAGTVTT++  AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N     ++I+ NKP GAKG YWKS YI S+MGPS+ +++  + D
Sbjct:  137 PNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230          
The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL1_PROMT1.122e-2659.5750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROMP1.122e-2657.2950S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM11.122e-2659.5750S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM91.465e-2656.2550S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM01.465e-2656.2550S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_CYAP71.465e-2652.5850S ribosomal protein L1 OS=Cyanothece sp. (strain... [more]
RK1_THAPS1.465e-2657.3050S ribosomal protein L1, chloroplastic OS=Thalass... [more]
RK1_PORPU1.465e-2655.9150S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_PROMM1.914e-2658.5150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]
RL1_PROM31.914e-2658.5150S ribosomal protein L1 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionC05138G11SK FerrChloL1 Citrus clementina cDNA clone C05138G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bp
GCGAGGCCTCGTGCCGAATTCGCACGAGGTTCAGTACGGAAAAAAGCCAT
GCGGTATGCATTTTTCCTTTTTTTTTTATTTGCTACAATCTCATCCACAT
TGATAATCTAGATCTCCTCACCTCACCATAATTCGCTCTCCTACAACTTT
TGCCAAGCAGTGGCAAGCCCTGGCATGGGTATCAAAGAGGCTGACTGAAC
AGTTAAAGATATCATTTACAAAATTTAGTTATGTCGTTTAGAAATTTGAT
GGAAGCTTGTAATCGAGCATTTCTTTTATGTTTAATCGAATGGAAGGTCC
CATTGATGAGCAAATGTAAGCACTTTTCCAGTACACTCCTTTGGCCCCTT
TTGGCTTGTTTGCTTCAATTGATTTAATAGCAGCAAGGAAGTTTATGAGG
AGGTCATCTTCAGAAAAATCAGCTTTCCCAAAAGGTATGTGGACAATCCC
AGTTTTATCTGCTCTATATTCAACTTTTCCCTTCTTGAATTCTTCTATGG
CCTGAGGTATGTTAGTTGTAACAGTACCAGCTTTAGGATTTGGCA
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