CX296321
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMT (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL2A) GN=rplA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26 Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVTT++ AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D Sbjct: 137 PNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMP (50S ribosomal protein L1 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26 Identity = 55/96 (57.29%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+E+ L N +SI+ NKP GAKG YW+S Y+ S+MGPS++++I + DY+ Sbjct: 137 PNPKAGTVTGDIASAIKEFKAGKLEFRADKAGIVHVRFGKASFTENALFENLKTLQESIDKNKPSGAKGKYWRSFYLTSTMGPSVQVDINALQDYQ 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM1 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain NATL1A) GN=rplA PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26 Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVTT++ AI+EFK GK+E+RADK GIVH+ FGKA FSE+ LL N +IE NKP GAKG +W+S +I S+MGPS+ ++I E+ D Sbjct: 137 PNPKAGTVTTDLEGAIKEFKAGKLEFRADKAGIVHVRFGKASFSEEALLENLKTLQTTIEKNKPSGAKGKFWRSFFITSTMGPSVEVDINELQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM9 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26 Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP G+KG YWKS Y+ S+MGPS++++I + DY+ Sbjct: 137 PNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGSKGKYWKSFYVTSTMGPSVQVDISAVQDYQ 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM0 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26 Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = -3 Query: 256 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYK 543 PNPKAGTVT +I AI+EFK GK+E+RADK GIVH+ FGKA F+++ L N +SI+ NKP GAKG YWK+ Y+ S+MGPS++++I + DY+ Sbjct: 137 PNPKAGTVTNDIANAIKEFKAGKLEFRADKAGIVHVRFGKASFTKEALFDNLKTLQESIDKNKPSGAKGKYWKTFYVTSTMGPSVQVDINAVQDYQ 232
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_CYAP7 (50S ribosomal protein L1 OS=Cyanothece sp. (strain PCC 7424) GN=rplA PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26 Identity = 51/97 (52.58%), Postives = 76/97 (78.35%), Query Frame = -3 Query: 253 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLDYKL 543 P+PK GTVTT++ AI+EFK GK E+RAD+TGIVH+ FGKA F+ +DLL+N A ++I+ N+P GAKG YW++ ++ +SMGPSI++++ + D K+ Sbjct: 139 PSPKGGTVTTDLAAAIQEFKAGKQEFRADRTGIVHVMFGKASFTAEDLLVNLKALQETIDRNRPSGAKGRYWRTVFVSASMGPSIQVDVNSLRDLKV 235
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_THAPS (50S ribosomal protein L1, chloroplastic OS=Thalassiosira pseudonana GN=rpl1 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26 Identity = 51/89 (57.30%), Postives = 73/89 (82.02%), Query Frame = -3 Query: 277 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNI 543 P+PK+GTV+TN+ + + +FKKGK EY+ADKTG+VH+ FGKA+FS+D L+ N + +SIE N+P G KG Y+KS +IC+SMGPSI+L++ Sbjct: 138 PSPKSGTVSTNLTETLSDFKKGKFEYKADKTGVVHVNFGKANFSKDQLMENLTSLYQSIEQNRPSGVKGKYFKSLFICTSMGPSIQLDL 226
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.465e-26 Identity = 52/93 (55.91%), Postives = 73/93 (78.49%), Query Frame = -3 Query: 265 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEML 543 P+PKAGTVT +I ++I EFK GKVEYR D+TGI+H+PFGK+ F E+DL++N SI+ NKP G+KG YWK+ ++ S+MGPSI+++I +L Sbjct: 137 PSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDSIDKNKPSGSKGKYWKTFFLSSTMGPSIQIDITSLL 229
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROMM (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplA PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26 Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVTT++ AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N ++I+ NKP GAKG YWKS YI S+MGPS+ +++ + D Sbjct: 137 PNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230
BLAST of CX296321 vs. ExPASy Swiss-Prot
Match: RL1_PROM3 (50S ribosomal protein L1 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplA PE=3 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26 Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = -3 Query: 262 PNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAIKSIEANKPKGAKGVYWKSAYICSSMGPSIRLNIKEMLD 543 PNPKAGTVTT++ AI+EFK GK+E+RAD+ GIVH+ FGKA FS D LL N ++I+ NKP GAKG YWKS YI S+MGPS+ +++ + D Sbjct: 137 PNPKAGTVTTDLAAAIKEFKAGKLEFRADRAGIVHVRFGKASFSADALLENLKTLQETIDRNKPSGAKGRYWKSLYITSTMGPSVEVDVTALQD 230 The following BLAST results are available for this feature:
BLAST of CX296321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296321 ID=CX296321; Name=CX296321; organism=Citrus clementina; type=EST; length=545bpback to top |