CX296329

Overview
NameCX296329
Unique NameCX296329
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12635 contig Ccv1_Contig12635:43..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296329 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 44/131 (33.59%), Postives = 75/131 (57.25%), Query Frame = 2
Query:  272 RSLSQVLNFMDQMTESPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEER 625
            R++ Q+++ MD++ E           SGT G +R  WD  + ++ + +  DMPGL KEDV+VS+E + LVI+                 +   Y +R+ LP+ + + D+IKAE+KNGVL +++PK + E++
Sbjct:  100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIPKTEVEKK 228          
BLAST of CX296329 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 43/125 (34.40%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  272 RSLSQVLNFMDQMTESPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEE 619
            RS+ Q+L+ MD++ E       R    G +R  W+ K+ +  + +  DMPG+ KEDV+VS+E + LVI+              R     Y +R+ LP+   + +++KAE+K+GVL +T+PK K E
Sbjct:  100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIPKTKIE 223          
BLAST of CX296329 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  272 RSLSQVLNFMDQMTE--------SPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEER 625
            R++ Q+L+ MD++ +        +P  S   G +R  WD  E D  + +  DMPGL +E+V+V +E + LVIR                      SV  Y  R+ LP++  ++ +++AE+KNGVL VTVPK + E +
Sbjct:   98 RTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKS-KVRAELKNGVLLVTVPKTEVERK 233          
The following BLAST results are available for this feature:
BLAST of CX296329 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS21C_SOLLC5.202e-1333.59Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA3.372e-1234.40Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS26P_ORYSJ1.674e-1132.8526.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC05138H11SK FerrChloL1 Citrus clementina cDNA clone C05138H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296329 ID=CX296329; Name=CX296329; organism=Citrus clementina; type=EST; length=695bp
TTGTTTTGTGCTTTCTTTAGAATTCGGCTCAATGGCGTCCTCTCTTGCTC
TCAAGAGGCTTGTTTCTTTTAATCTCATCCCCAGGGCTTTACGCTGCACC
GTCGCTCCTTCTGCTACTTCGGCATCTCGGTTCTTCAACACAAACGCTGT
TCGTCAATACGATGACGGCGGAGACGACCGTGATCTCGACATTGATCGCC
GTTCCGCTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCTCAGATGTG
TTTGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTGAACTTCAT
GGATCAGATGACGGAGAGCCCTTTCTTCAGTGGCACGCGTGGTGGACTGC
GCCGAGGCTGGGATGCCAAAGAAACCGATGACGCATTGAACCTCAGCATC
GACATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTGGAGCAGAA
CACTCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGACGAAGAGA
GCGTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGCTCTACAGG
ACTGATCAGATCAAGGCTGAGATGAAGAATGGTGTGCTGAAGGTGACGGT
GCCCAAGGTGAAGGAAGAGGAGAGGGCTGATGTGTTCCCAGTGAAGGTTG
ATTAAAGAGTTGGCTTTTAGTAGTAGCTTTTCTGTCCAGGATATT
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