CX296333

Overview
NameCX296333
Unique NameCX296333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.867e-16
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  408 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADT 599
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D S+L+ TYEG HNH L  A T
Sbjct:  298 DGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQVQRCAEDRSILITTYEGNHNHPLPPAAT 361          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK71_ARATH (Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = -2
Query:  423 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 653
            +R VRV  ++    D   D + WRKYGQK +K SP+PR YY+C++ + C  +K VER+  DPS+++ TYEG+HNH +
Sbjct:  119 EREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPSIVITTYEGKHNHPI 194          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK42_ARATH (Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.707e-15
Identity = 39/80 (48.75%), Postives = 49/80 (61.25%), Query Frame = -2
Query:  414 VRVPAVSLRLSDIPP---DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 644
            +R   VS+R     P   D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D ++L+ TYEG HNH L  A
Sbjct:  275 MRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPA 354          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK48_ARATH (Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 33/57 (57.89%), Postives = 45/57 (78.95%), Query Frame = -2
Query:  429 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 599
            D + WRKYGQK +K SP+PR YY+C++V GC  +K VER+ DDPS+++ TYEG+H H
Sbjct:  222 DGYRWRKYGQKAVKNSPYPRSYYRCTTV-GCGVKKRVERSSDDPSIVMTTYEGQHTH 277          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK18_ARATH (WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.229e-15
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = -2
Query:  429 VRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 644
            V VP  +   S    D F WRKYGQK  + +P PR Y++CS    CP +K V+R+ +DPS+LV TYEG HNH
Sbjct:  162 VYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.487e-15
Identity = 34/64 (53.12%), Postives = 42/64 (65.62%), Query Frame = -2
Query:  408 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADT 599
            D   WRKYGQK  KG+P PR YY+C+   GCP RK V+R  +D ++L  TYEG HNH L  + T
Sbjct:  240 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSAT 303          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.472e-15
Identity = 39/85 (45.88%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  408 KRVVRVPAVSLRLSDIPP---DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADT 653
            + +V+   VS+R     P   D   WRKYGQK  KG+P PR YY+C+    CP RK V+R  +D S+L+ TYEG HNH L ++ T
Sbjct:  171 QNLVKKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSEDMSILISTYEGTHNHPLPMSAT 255          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK34_ARATH (Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = -2
Query:  414 RVVRVPAVSLRLS---DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVA 650
            R  R P V ++ +   DI  D + WRKYGQK +KG+P+PR YYKC++  GC   KHVERA DD   ++ TY G+H H +  A
Sbjct:  353 RASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTA-NGCTVTKHVERASDDFKSVLTTYIGKHTHVVPAA 433          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK28_ARATH (Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.445e-14
Identity = 34/77 (44.16%), Postives = 52/77 (67.53%), Query Frame = -2
Query:  423 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 653
            +R  RV  ++    D   D + WRKYGQK +K SP+PR YY+C++ + C  +K VER+  DP++++ TYEG+HNH +
Sbjct:  155 QREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSFQDPTVVITTYEGQHNHPI 230          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK10_ARATH (Probable WRKY transcription factor 10 OS=Arabidopsis thaliana GN=WRKY10 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = -2
Query:  429 DIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 611
            D P D + WRKYGQK +KG+P+PR Y+KC+++  C  +KHVER  D+  ++V TY+G HNH
Sbjct:  304 DNPNDGYRWRKYGQKVVKGNPNPRSYFKCTNIE-CRVKKHVERGADNIKLVVTTYDGIHNH 363          
The following BLAST results are available for this feature:
BLAST of CX296333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK31_ARATH5.867e-1656.25Probable WRKY transcription factor 31 OS=Arabidops... [more]
WRK71_ARATH1.707e-1546.75Probable WRKY transcription factor 71 OS=Arabidops... [more]
WRK42_ARATH1.707e-1548.75Probable WRKY transcription factor 42 OS=Arabidops... [more]
WRK48_ARATH2.229e-1557.89Probable WRKY transcription factor 48 OS=Arabidops... [more]
WRK18_ARATH2.229e-1550.00WRKY transcription factor 18 OS=Arabidopsis thalia... [more]
WRK47_ARATH6.487e-1553.13Probable WRKY transcription factor 47 OS=Arabidops... [more]
WRK61_ARATH8.472e-1545.88Probable WRKY transcription factor 61 OS=Arabidops... [more]
WRK34_ARATH1.445e-1447.56Probable WRKY transcription factor 34 OS=Arabidops... [more]
WRK28_ARATH1.445e-1444.16Probable WRKY transcription factor 28 OS=Arabidops... [more]
WRK10_ARATH1.887e-1452.46Probable WRKY transcription factor 10 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05139A05SK FerrChloL1 Citrus clementina cDNA clone C05139A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296333 ID=CX296333; Name=CX296333; organism=Citrus clementina; type=EST; length=654bp
GGTTAAGCTAAGTAATGAGGTGCTGCGCTTTTATTCAATCCTGGGAAACA
TAAGAACAAATCCAACATCTTCCCTAGCTTTTAGTTTCTAATTAACATTG
GAACACACAGTGCTTGGGTATAGAGACAGGTAGAGCTATACCAAGAGGAA
TCCCATATTATACAGACAGGGGAATGAACAAAATGAACCCAGAAATCTCC
TTCGAGACAGACAATTCCAAGCTGGGCTTCTGCTGAATTCTTAACTTTAA
AGCAAAAGCTAGCCAGCCAGACAGTTCCCTAGTTCTGTTAAATATAATAT
ATAATATTGCCACCACCGCTATGTAATTCCCCCCCTAACCAATGATCTAA
TTTCTCACGACTGGTTTTTTTGTTGCGTGTCTAAGAAGATTCCAGGATGA
GATTTCTAGTATCTGCAACAGAGAGTGAGTGATTGTGCTCGCCTTCGTAG
GTGACTACAAGCATCGATGGATCATCCAACGCTCTCTCCACGTGCTTGCG
TGCAGGGCAGCCTCTCACACTGCTGCACTTGTAGTAACCCCTCGGATGAG
GAGATCCTTTGATGGGTTTCTGTCCATACTTCCTCCACGAGAAATCATCA
GGTGGAATATCAGACAACCTTAAGCTTACAGCCGGAACCCTAACAACTCT
CTTC
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