CX296333

Overview
NameCX296333
Unique NameCX296333
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK68_ARATH (Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = -2
Query:  429 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 599
            D + WRKYGQKP+K SP PR YY+C++   C  +K VER+  DPS ++ TYEG+H H
Sbjct:  119 DGYKWRKYGQKPVKDSPFPRNYYRCTTT-WCDVKKRVERSFSDPSSVITTYEGQHTH 174          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK57_ARATH (Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = -2
Query:  429 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 599
            D + WRKYGQK +K SP PR YY+C++ R C  +K VER+ DDPS+++ TYEG+H H
Sbjct:  148 DGYRWRKYGQKAVKNSPFPRSYYRCTNSR-CTVKKRVERSSDDPSIVITTYEGQHCH 203          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK55_ARATH (WRKY transcription factor 55 OS=Arabidopsis thaliana GN=WRKY55 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 44/109 (40.37%), Postives = 61/109 (55.96%), Query Frame = -2
Query:  336 KRVVRVPAVSLRLSDIPPDD-FSWRKYGQKPIKGSPHPRGYYKCS--SVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRNLILESS*TRNKKTSREKLDHWL 653
            ++ V V A+    +D+PPDD  +WRKYGQK I GS  PR YY+C+   +  CPA+K V+R  DDP    VTY G H    S A T +    S+   +  T+   +D+ L
Sbjct:  155 EQTVLVAALRTGNTDLPPDDNHTWRKYGQKEILGSRFPRAYYRCTHQKLYNCPAKKQVQRLNDDPFTFRVTYRGSHTCYNSTAPTASSATPSTIPISSVTTGHSVDYGL 263          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK40_ARATH (Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 33/67 (49.25%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  402 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL-SVADTRN 599
            D + WRKYGQK  + +P PR Y+KC+    C  +K V+R+++D S+LV TYEGEHNH + S  D+ N
Sbjct:  147 DGYQWRKYGQKVTRDNPSPRAYFKCACAPSCSVKKKVQRSVEDQSVLVATYEGEHNHPMPSQIDSNN 213          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK13_ARATH (Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.204e-14
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -2
Query:  420 KRVVRVPAV---SLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLS 653
            +R VR P     +L   D+  D + WRKYGQK +K + HPR YY+C+  + C  +K VER  DDP M++ TYEG H HS S
Sbjct:  203 RRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDK-CRVKKRVERLADDPRMVITTYEGRHLHSPS 282          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRKY8_ARATH (Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 33/77 (42.86%), Postives = 51/77 (66.23%), Query Frame = -2
Query:  423 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSL 653
            K+  RV  ++    D   D + WRKYGQK +K SP+PR YY+C++ + C  +K VER+  DP++++ TYE +HNH +
Sbjct:  166 KKEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQK-CNVKKRVERSYQDPTVVITTYESQHNHPI 241          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK25_ARATH (Probable WRKY transcription factor 25 OS=Arabidopsis thaliana GN=WRKY25 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = -2
Query:  402 RVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHSLSVADTRN 641
            RV   ++   D+  D F WRKYGQK +KG+ +PR YYKC + +GC  +K VER+  D   ++ TYEG HNH +  A  R+
Sbjct:  315 RVVVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSYYKC-TFQGCGVKKQVERSAADERAVLTTYEGRHNHDIPTALRRS 393          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK23_ARATH (Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.223e-13
Identity = 35/75 (46.67%), Postives = 47/75 (62.67%), Query Frame = -2
Query:  429 KRVVRVPAVSLRLSDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 653
            +R  RV  ++    D   D + WRKYGQK +K SP PR YY+C++   C  +K VER+  DPS +V TYEG+H H
Sbjct:  157 QREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTA-SCNVKKRVERSFRDPSTVVTTYEGQHTH 230          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK24_ARATH (Probable WRKY transcription factor 24 OS=Arabidopsis thaliana GN=WRKY24 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.559e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = -2
Query:  429 KRVVRVPAVSLRL---SDIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNH 653
            KR  +VP ++       D+  D + WRKYGQK +K + HPR YY+C +   C  +K V+R   DP+++V TYEG HNH
Sbjct:   78 KRSRKVPRIAFHTRSDDDVLDDGYRWRKYGQKSVKHNAHPRSYYRC-TYHTCNVKKQVQRLAKDPNVVVTTYEGVHNH 154          
BLAST of CX296333 vs. ExPASy Swiss-Prot
Match: WRK60_ARATH (Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.649e-13
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = -2
Query:  426 DDFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHS 599
            D + WRKYGQK  + +P PR Y++CS    C  +K V+R+ +DPS LV TYEG HNH+
Sbjct:  147 DGYQWRKYGQKITRDNPSPRAYFRCSFSPSCLVKKKVQRSAEDPSFLVATYEGTHNHT 204          
The following BLAST results are available for this feature:
BLAST of CX296333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
WRK68_ARATH3.219e-1454.39Probable WRKY transcription factor 68 OS=Arabidops... [more]
WRK57_ARATH3.219e-1456.14Probable WRKY transcription factor 57 OS=Arabidops... [more]
WRK55_ARATH4.204e-1440.37WRKY transcription factor 55 OS=Arabidopsis thalia... [more]
WRK40_ARATH4.204e-1449.25Probable WRKY transcription factor 40 OS=Arabidops... [more]
WRK13_ARATH4.204e-1446.91Probable WRKY transcription factor 13 OS=Arabidops... [more]
WRKY8_ARATH7.172e-1442.86Probable WRKY transcription factor 8 OS=Arabidopsi... [more]
WRK25_ARATH9.367e-1445.00Probable WRKY transcription factor 25 OS=Arabidops... [more]
WRK23_ARATH1.223e-1346.67Probable WRKY transcription factor 23 OS=Arabidops... [more]
WRK24_ARATH3.559e-1343.59Probable WRKY transcription factor 24 OS=Arabidops... [more]
WRK60_ARATH4.649e-1351.72Probable WRKY transcription factor 60 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC05139A05SK FerrChloL1 Citrus clementina cDNA clone C05139A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296333 ID=CX296333; Name=CX296333; organism=Citrus clementina; type=EST; length=654bp
GGTTAAGCTAAGTAATGAGGTGCTGCGCTTTTATTCAATCCTGGGAAACA
TAAGAACAAATCCAACATCTTCCCTAGCTTTTAGTTTCTAATTAACATTG
GAACACACAGTGCTTGGGTATAGAGACAGGTAGAGCTATACCAAGAGGAA
TCCCATATTATACAGACAGGGGAATGAACAAAATGAACCCAGAAATCTCC
TTCGAGACAGACAATTCCAAGCTGGGCTTCTGCTGAATTCTTAACTTTAA
AGCAAAAGCTAGCCAGCCAGACAGTTCCCTAGTTCTGTTAAATATAATAT
ATAATATTGCCACCACCGCTATGTAATTCCCCCCCTAACCAATGATCTAA
TTTCTCACGACTGGTTTTTTTGTTGCGTGTCTAAGAAGATTCCAGGATGA
GATTTCTAGTATCTGCAACAGAGAGTGAGTGATTGTGCTCGCCTTCGTAG
GTGACTACAAGCATCGATGGATCATCCAACGCTCTCTCCACGTGCTTGCG
TGCAGGGCAGCCTCTCACACTGCTGCACTTGTAGTAACCCCTCGGATGAG
GAGATCCTTTGATGGGTTTCTGTCCATACTTCCTCCACGAGAAATCATCA
GGTGGAATATCAGACAACCTTAAGCTTACAGCCGGAACCCTAACAACTCT
CTTC
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