CX296343
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_METBU (50S ribosomal protein L10e OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl10e PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.259e-25 Identity = 62/165 (37.58%), Postives = 99/165 (60.00%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 513 PA YR +K++ + + ++ GVP ++ +D+G K +FP + L++ E+ + ALEAARI N+ M AG+ FH+++RV+P VLR NK + AGADR+ +GMR A+GK T ARV+ Q + ++ + + A++ALRRA K P I+V + Sbjct: 5 PASMYRNVKSRSFTRRKYMGGVPGSQVIHFDMGNKTA---DFPVKITLLADERCQIRHTALEAARITANRAMTTAAGRSGFHMKLRVYPHEVLRENKQATGAGADRVSSGMRAAYGKNVSTAARVSARQKIFTISVNKEHFIIAKDALRRAGQKLPTPVTIVVDQ 166
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.805e-25 Identity = 66/165 (40.00%), Postives = 95/165 (57.58%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVA-IGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 507 P RCYR Y + + GVP PKI + +G KK D F V L++ + + ALEAAR+ K M G + F+L V +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+ +G +++++R K + A++A + A K P +I+V Sbjct: 5 PGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLPLDTEIVV 166
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24 Identity = 64/163 (39.26%), Postives = 94/163 (57.67%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 507 PAR YR + K Y + + GVP K+ +D+G ++FP +HL + E + A+EAARI N+ + K G++ FHL++R +P HVLR +K + AGADR+ GMR AFGK GT ARVA Q + +V A++AL + +K P ++IV Sbjct: 5 PARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLPTPVRVIV 164
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24 Identity = 64/163 (39.26%), Postives = 95/163 (58.28%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIV 507 P YR ++ + + + ++ GVP ++ YD+G K FP + LV+ EK + ALEAARI N+++ AGK F++++RV+P VLR NK + AGADR+ +GMR AFGK GT ARV Q L +V + N A++AL A K P +I++ Sbjct: 5 PGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTT--FPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVI 165
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_THESM (50S ribosomal protein L10e OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl10e PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24 Identity = 62/156 (39.74%), Postives = 86/156 (55.13%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 486 PA+ R + Y + + RG P P+I I+D+G +F F V L + E + ALEAAR N+Y++K G+ FH ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +L+VR + A A++RA KFP Sbjct: 5 PAKIDRYVDKPAYTRREYIRGAPGPRITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARTQLNRYLSKNVGRSNFHYKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILTVRVNKQHLKFALAAMKRASMKFP 157
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24 Identity = 62/165 (37.58%), Postives = 91/165 (55.15%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 513 P + YR + K Y + ++ GVP KI +++G + EFP + L E + ALEAARIA N+ M G+ FH ++R +P HVLR NK + AGADR+ GMR AFGK GT ARV Q + +V + +++ALR +K P ++++ R Sbjct: 5 PGKMYRNLAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKAVGTAARVQPKQKVFTVYTNEQYIEKSKDALRHGGYKLPSPARLVIER 166
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.291e-24 Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 486 PA+ R + Y + + RG P PKI I+D+G +F F V L + E + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 5 PAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24 Identity = 63/156 (40.38%), Postives = 84/156 (53.85%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 486 PA+ R + Y + + RG P PKI I+D+G +F F V L + E + ALEAAR N+Y+ K G+ +H ++RV+PF VLR N M + ADR GMR FGKP G AR+ Q +LS+R + A E RRA KFP Sbjct: 5 PAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_METMJ (50S ribosomal protein L10e OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl10e PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24 Identity = 65/165 (39.39%), Postives = 91/165 (55.15%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 513 PA+ YR + K Y + + GVP KI +D+G +++P + +V E + ALEAARI N+ + K G+ FHL++R P HVLR NK + AGADR+ GMR AFGK GT ARV GQ + SV A+ +L+R +K P +I+ R Sbjct: 5 PAKMYRNLAKKAYTRREYMGGVPGSKIVQFDMGNL---TEDYPVELSIVVDETCQIRHTALEAARIGINRQLQKEVGRANFHLKIRTFPHHVLRENKQATGAGADRVSEGMRLAFGKAVGTAARVEKGQKVFSVWTSPQYVDKAKVSLKRGIYKLPTPARIVEER 166
BLAST of CX296343 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24 Identity = 61/166 (36.75%), Postives = 92/166 (55.42%), Query Frame = 1 Query: 19 PARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQKIIVSR 513 PA YR I Y + + G+P KI + +G K+K D++P + L+ E + +LEA+R++ N+++ K G++ + + +R P VLR NK + AGADR+ GMR AFGK GT ARV G+ L + C ++ H +EA RRA K +I V R Sbjct: 5 PASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVER 170 The following BLAST results are available for this feature:
BLAST of CX296343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 92
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296343 ID=CX296343; Name=CX296343; organism=Citrus clementina; type=EST; length=718bpback to top |