CX296351

Overview
NameCX296351
Unique NameCX296351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig683 contig Ccv1_Contig683:16..400. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURCH (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain HI2424) GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.915e-32
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURCA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain AU 1054) GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.915e-32
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURA4 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia ambifaria (strain MC40-6) GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.915e-32
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGISVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_VIBVY (Glycine dehydrogenase [decarboxylating] OS=Vibrio vulnificus (strain YJ016) GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.725e-32
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            ++AA  GSA ILPIS+ YIAMMG+ GLTEA+K+AILNANY+ +RL  HYP+L+RG NG VAHE I+D+R LK   GI  ED+A+RLMDYGFH PT
Sbjct:  745 VSAADLGSASILPISWAYIAMMGADGLTEATKVAILNANYVMERLRPHYPVLYRGTNGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFHAPT 839
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_VIBVU (Glycine dehydrogenase [decarboxylating] OS=Vibrio vulnificus GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.725e-32
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            ++AA  GSA ILPIS+ YIAMMG+ GLTEA+K+AILNANY+ +RL  HYP+L+RG NG VAHE I+D+R LK   GI  ED+A+RLMDYGFH PT
Sbjct:  745 VSAADLGSASILPISWAYIAMMGADGLTEATKVAILNANYVMERLRPHYPVLYRGTNGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFHAPT 839
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_VIBF1 (Glycine dehydrogenase [decarboxylating] OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.725e-32
Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:   70 IAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            ++AA  GSA ILPIS+ YIAMMG  GLTEA+K+AILNANY+ +RL  HYP+L+RG NG +AHE I+D+R LK T GI  ED+A+RLMD+GFH PT
Sbjct:  746 VSAADLGSASILPISWAYIAMMGEMGLTEATKVAILNANYVMERLRPHYPVLYRGTNGRIAHECIIDIRPLKETTGISEEDIAKRLMDFGFHAPT 840
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_HAHCH (Glycine dehydrogenase [decarboxylating] OS=Hahella chejuensis (strain KCTC 2396) GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.725e-32
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +  I+AAPWGSA ILPIS+TYI MMG +GLTEA+K AILNANY+AKRLE HYP+L+ G  G VAHE I+D+R  K++ G+  +D+A+RL+D+GFH PT
Sbjct:  749 IAPISAAPWGSAGILPISWTYIRMMGGEGLTEATKSAILNANYIAKRLEPHYPVLYTGSQGFVAHECIIDVRPFKDSCGVTVDDIAKRLIDFGFHAPT 846
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURVG (Glycine dehydrogenase [decarboxylating] OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.725e-32
Identity = 64/98 (65.31%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K T+GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKETSGITVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BDEBA (Glycine dehydrogenase [decarboxylating] OS=Bdellovibrio bacteriovorus GN=gcvP PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.725e-32
Identity = 64/118 (54.24%), Postives = 87/118 (73.73%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LP H +V   G      +  +    +APWGSA ILPIS+ YI MMG++GL +A+ ++IL+ANY+AK+LE HYP+L++G NG VAHE IVD+R +K T+GI+  DVA+RLMD+GFH PT
Sbjct:  731 LPKHSLVPEAG-----PANGISATTSAPWGSASILPISWAYITMMGAQGLRKATLVSILSANYIAKKLEAHYPVLYKGKNGLVAHECIVDVREIKKTSGIDVTDVAKRLMDFGFHAPT 843
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_STRCO (Glycine dehydrogenase [decarboxylating] OS=Streptomyces coelicolor GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.318e-31
Identity = 63/118 (53.39%), Postives = 86/118 (72.88%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LP+HP+      PA      +G I+AAPWGSA ILPIS++Y+ +MG +GL  A+++A+L+ANY+AKRLE H+P+L+ G  G VAHE I+DLR L    G+  +DVA+RL+DYGFH PT
Sbjct:  735 LPNHPLQ-----PAAGPQTGVGPISAAPWGSAGILPISWSYVRLMGGEGLKRATQVAVLSANYIAKRLEPHFPVLYNGPGGLVAHECIIDLRPLTKATGVSVDDVAKRLIDYGFHAPT 847
The following BLAST results are available for this feature:
BLAST of CX296351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GCSP_BURCH5.915e-3265.31Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCA5.915e-3265.31Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURA45.915e-3265.31Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_VIBVY7.725e-3266.32Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBVU7.725e-3266.32Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_VIBF17.725e-3265.26Glycine dehydrogenase [decarboxylating] OS=Vibrio ... [more]
GCSP_HAHCH7.725e-3263.27Glycine dehydrogenase [decarboxylating] OS=Hahella... [more]
GCSP_BURVG7.725e-3265.31Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BDEBA7.725e-3254.24Glycine dehydrogenase [decarboxylating] OS=Bdellov... [more]
GCSP_STRCO1.318e-3153.39Glycine dehydrogenase [decarboxylating] OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionC05139D09SK FerrChloL1 Citrus clementina cDNA clone C05139D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296351 ID=CX296351; Name=CX296351; organism=Citrus clementina; type=EST; length=385bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCCAACGTCTTATGGATTATGGATTCCATGGACC
CACATGTCATGGCCTGTTCAGGCACACTTATGATT
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